miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 70934 0.66 0.704751
Target:  5'- uCCaGCG-CCUG-CGCGUccGCCGGGaacGCCg -3'
miRNA:   3'- -GG-CGUaGGACuGCGCG--CGGCCCc--UGG- -5'
23802 3' -61.4 NC_005261.1 + 10542 0.66 0.704751
Target:  5'- gCUGUcgCCcccGGCGCGCcuGCCGggcccacucuuuGGGGCCg -3'
miRNA:   3'- -GGCGuaGGa--CUGCGCG--CGGC------------CCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 129683 0.66 0.704751
Target:  5'- -gGCGUCgC-GACuCGgGCCGGGG-CCg -3'
miRNA:   3'- ggCGUAG-GaCUGcGCgCGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 123438 0.66 0.704751
Target:  5'- gCCGCAgCCgcagcucgcgcaUGACGC-CGUCGcGGGCCu -3'
miRNA:   3'- -GGCGUaGG------------ACUGCGcGCGGCcCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 38735 0.66 0.704751
Target:  5'- cCCGCAgagCCcgGGCcCGCGCCaGagccGGACCc -3'
miRNA:   3'- -GGCGUa--GGa-CUGcGCGCGGcC----CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 63014 0.66 0.704751
Target:  5'- gCCGCGcCCgcGCGgGCGCCGGcGcCCg -3'
miRNA:   3'- -GGCGUaGGacUGCgCGCGGCCcCuGG- -5'
23802 3' -61.4 NC_005261.1 + 39321 0.66 0.704751
Target:  5'- cUCGCGUCCaacCGCGcCGCCGcGG-CCa -3'
miRNA:   3'- -GGCGUAGGacuGCGC-GCGGCcCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 83118 0.66 0.704751
Target:  5'- gCCGCcgCCaGcCGCGCGCgCGGcacgcccugcaGGugCg -3'
miRNA:   3'- -GGCGuaGGaCuGCGCGCG-GCC-----------CCugG- -5'
23802 3' -61.4 NC_005261.1 + 60844 0.66 0.704751
Target:  5'- gCgGCggCgaGGuCGCGCGCCGGGccgaGCCc -3'
miRNA:   3'- -GgCGuaGgaCU-GCGCGCGGCCCc---UGG- -5'
23802 3' -61.4 NC_005261.1 + 15892 0.66 0.703794
Target:  5'- aCGCGcgggcgcuuuaucUCCcGcccCGCGCaGCCGGGG-CCg -3'
miRNA:   3'- gGCGU-------------AGGaCu--GCGCG-CGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 130841 0.66 0.703794
Target:  5'- gCGCucaaCCUuGCGCGCgcgcccgGCCGGGcGCCg -3'
miRNA:   3'- gGCGua--GGAcUGCGCG-------CGGCCCcUGG- -5'
23802 3' -61.4 NC_005261.1 + 64866 0.66 0.702837
Target:  5'- gUCGCGUCCcagaucagcggcGGCGggaGCGCCGGGu-CCa -3'
miRNA:   3'- -GGCGUAGGa-----------CUGCg--CGCGGCCCcuGG- -5'
23802 3' -61.4 NC_005261.1 + 116366 0.66 0.695161
Target:  5'- uCCGUG-CCgccGCGCGCaauGCCgaucgGGGGGCCg -3'
miRNA:   3'- -GGCGUaGGac-UGCGCG---CGG-----CCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 136603 0.66 0.695161
Target:  5'- gCGCAgCgUGgagcggcgcGCGCGCGCCGaGGGCg -3'
miRNA:   3'- gGCGUaGgAC---------UGCGCGCGGCcCCUGg -5'
23802 3' -61.4 NC_005261.1 + 45099 0.66 0.695161
Target:  5'- aCGCG-CCUG-CGCGUggaGCCGGGcACg -3'
miRNA:   3'- gGCGUaGGACuGCGCG---CGGCCCcUGg -5'
23802 3' -61.4 NC_005261.1 + 104161 0.66 0.695161
Target:  5'- aCCGCgccGUCCgcgGGCGcCGCGCgCGggucgucgggcGGGACg -3'
miRNA:   3'- -GGCG---UAGGa--CUGC-GCGCG-GC-----------CCCUGg -5'
23802 3' -61.4 NC_005261.1 + 60704 0.66 0.695161
Target:  5'- gCCGCG-CgUGGCG-GCGCaCGGcGGugCc -3'
miRNA:   3'- -GGCGUaGgACUGCgCGCG-GCC-CCugG- -5'
23802 3' -61.4 NC_005261.1 + 88131 0.66 0.695161
Target:  5'- aCC-CAuUCCUcGCGcCGCGCgGGGGcGCCc -3'
miRNA:   3'- -GGcGU-AGGAcUGC-GCGCGgCCCC-UGG- -5'
23802 3' -61.4 NC_005261.1 + 127795 0.66 0.695161
Target:  5'- gCgGCGggCC-GGCGcCGCGgCGGcGGGCCg -3'
miRNA:   3'- -GgCGUa-GGaCUGC-GCGCgGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 44251 0.66 0.695161
Target:  5'- gCGCggCC-GACgccgcgGCGCGCgGGGGGgCg -3'
miRNA:   3'- gGCGuaGGaCUG------CGCGCGgCCCCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.