Results 41 - 60 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23802 | 3' | -61.4 | NC_005261.1 | + | 104161 | 0.66 | 0.695161 |
Target: 5'- aCCGCgccGUCCgcgGGCGcCGCGCgCGggucgucgggcGGGACg -3' miRNA: 3'- -GGCG---UAGGa--CUGC-GCGCG-GC-----------CCCUGg -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 116366 | 0.66 | 0.695161 |
Target: 5'- uCCGUG-CCgccGCGCGCaauGCCgaucgGGGGGCCg -3' miRNA: 3'- -GGCGUaGGac-UGCGCG---CGG-----CCCCUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 44309 | 0.66 | 0.695161 |
Target: 5'- gCCGCugcCCgcgGGCGC-CGCagacgGGGGGCUg -3' miRNA: 3'- -GGCGua-GGa--CUGCGcGCGg----CCCCUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 87458 | 0.66 | 0.694199 |
Target: 5'- gCCGCG-CCUGcucgcagGCGCGCGUCaGGuucggcgcGGCCg -3' miRNA: 3'- -GGCGUaGGAC-------UGCGCGCGGcCC--------CUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 89825 | 0.66 | 0.685523 |
Target: 5'- cCCGCGgcaCUucgcGGC-CGgGCCGGaGGGCCg -3' miRNA: 3'- -GGCGUag-GA----CUGcGCgCGGCC-CCUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 15009 | 0.66 | 0.685523 |
Target: 5'- gCGCgggaggaggaGUUgUcGGCGgGUGCCGGGGGCg -3' miRNA: 3'- gGCG----------UAGgA-CUGCgCGCGGCCCCUGg -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 55839 | 0.66 | 0.685523 |
Target: 5'- gCCGgguCGUCCcGGuC-CGCGCCGGcgcGGACCa -3' miRNA: 3'- -GGC---GUAGGaCU-GcGCGCGGCC---CCUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 19247 | 0.66 | 0.685523 |
Target: 5'- aCUGCGggggCgCUGAacaGCGCGCgCGGGuacGCCa -3' miRNA: 3'- -GGCGUa---G-GACUg--CGCGCG-GCCCc--UGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 88166 | 0.66 | 0.685523 |
Target: 5'- gCGCAgccgggCCggggcGACGCcggcgGCGCCGGcgaggcGGGCCg -3' miRNA: 3'- gGCGUa-----GGa----CUGCG-----CGCGGCC------CCUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 131473 | 0.66 | 0.685523 |
Target: 5'- cCCGCcUCCgcgaGCGCGCCGucGACg -3' miRNA: 3'- -GGCGuAGGacugCGCGCGGCccCUGg -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 54146 | 0.66 | 0.685523 |
Target: 5'- gCCGCAcgcggCCguGCGCGggguUGCCGGGaaGACCa -3' miRNA: 3'- -GGCGUa----GGacUGCGC----GCGGCCC--CUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 98278 | 0.66 | 0.685523 |
Target: 5'- gCGCGUUC-GACGCccgGCGCguccgcggccuCGGGGGCg -3' miRNA: 3'- gGCGUAGGaCUGCG---CGCG-----------GCCCCUGg -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 84976 | 0.66 | 0.685523 |
Target: 5'- gCGCGUCC--GCGaUGCGCCGGcGcACCc -3' miRNA: 3'- gGCGUAGGacUGC-GCGCGGCC-CcUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 115700 | 0.66 | 0.685523 |
Target: 5'- uCCGUGUCCgucguguaGACGUGCGCCacGGugUu -3' miRNA: 3'- -GGCGUAGGa-------CUGCGCGCGGccCCugG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 129313 | 0.66 | 0.685523 |
Target: 5'- cCCGCGccugCgCUGGCGcCGCGUCGccGACCu -3' miRNA: 3'- -GGCGUa---G-GACUGC-GCGCGGCccCUGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 109465 | 0.66 | 0.684557 |
Target: 5'- cCCGCuUCgCgcguGCGCGCccgagcgcaaaugGCCGGGGcCCg -3' miRNA: 3'- -GGCGuAG-Gac--UGCGCG-------------CGGCCCCuGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 21355 | 0.66 | 0.67972 |
Target: 5'- cCCGCcccuggcuugagcCCUGAC-CGCGCCGGaGGCg -3' miRNA: 3'- -GGCGua-----------GGACUGcGCGCGGCCcCUGg -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 19539 | 0.66 | 0.675844 |
Target: 5'- cCCGCGUCac--CGCcaGCGCCGuGGGgagcGCCa -3' miRNA: 3'- -GGCGUAGgacuGCG--CGCGGC-CCC----UGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 93654 | 0.66 | 0.675844 |
Target: 5'- uCCGCguacgcccaccgGUCCgcgGGCgGCgGCGCCGGcGGggcGCCg -3' miRNA: 3'- -GGCG------------UAGGa--CUG-CG-CGCGGCC-CC---UGG- -5' |
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23802 | 3' | -61.4 | NC_005261.1 | + | 50573 | 0.66 | 0.675844 |
Target: 5'- aCGCG-CCUGGCGUcCGCCgcgagcGGGGAg- -3' miRNA: 3'- gGCGUaGGACUGCGcGCGG------CCCCUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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