miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 3' -61.4 NC_005261.1 + 104161 0.66 0.695161
Target:  5'- aCCGCgccGUCCgcgGGCGcCGCGCgCGggucgucgggcGGGACg -3'
miRNA:   3'- -GGCG---UAGGa--CUGC-GCGCG-GC-----------CCCUGg -5'
23802 3' -61.4 NC_005261.1 + 116366 0.66 0.695161
Target:  5'- uCCGUG-CCgccGCGCGCaauGCCgaucgGGGGGCCg -3'
miRNA:   3'- -GGCGUaGGac-UGCGCG---CGG-----CCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 44309 0.66 0.695161
Target:  5'- gCCGCugcCCgcgGGCGC-CGCagacgGGGGGCUg -3'
miRNA:   3'- -GGCGua-GGa--CUGCGcGCGg----CCCCUGG- -5'
23802 3' -61.4 NC_005261.1 + 87458 0.66 0.694199
Target:  5'- gCCGCG-CCUGcucgcagGCGCGCGUCaGGuucggcgcGGCCg -3'
miRNA:   3'- -GGCGUaGGAC-------UGCGCGCGGcCC--------CUGG- -5'
23802 3' -61.4 NC_005261.1 + 89825 0.66 0.685523
Target:  5'- cCCGCGgcaCUucgcGGC-CGgGCCGGaGGGCCg -3'
miRNA:   3'- -GGCGUag-GA----CUGcGCgCGGCC-CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 15009 0.66 0.685523
Target:  5'- gCGCgggaggaggaGUUgUcGGCGgGUGCCGGGGGCg -3'
miRNA:   3'- gGCG----------UAGgA-CUGCgCGCGGCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 55839 0.66 0.685523
Target:  5'- gCCGgguCGUCCcGGuC-CGCGCCGGcgcGGACCa -3'
miRNA:   3'- -GGC---GUAGGaCU-GcGCGCGGCC---CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 19247 0.66 0.685523
Target:  5'- aCUGCGggggCgCUGAacaGCGCGCgCGGGuacGCCa -3'
miRNA:   3'- -GGCGUa---G-GACUg--CGCGCG-GCCCc--UGG- -5'
23802 3' -61.4 NC_005261.1 + 88166 0.66 0.685523
Target:  5'- gCGCAgccgggCCggggcGACGCcggcgGCGCCGGcgaggcGGGCCg -3'
miRNA:   3'- gGCGUa-----GGa----CUGCG-----CGCGGCC------CCUGG- -5'
23802 3' -61.4 NC_005261.1 + 131473 0.66 0.685523
Target:  5'- cCCGCcUCCgcgaGCGCGCCGucGACg -3'
miRNA:   3'- -GGCGuAGGacugCGCGCGGCccCUGg -5'
23802 3' -61.4 NC_005261.1 + 54146 0.66 0.685523
Target:  5'- gCCGCAcgcggCCguGCGCGggguUGCCGGGaaGACCa -3'
miRNA:   3'- -GGCGUa----GGacUGCGC----GCGGCCC--CUGG- -5'
23802 3' -61.4 NC_005261.1 + 98278 0.66 0.685523
Target:  5'- gCGCGUUC-GACGCccgGCGCguccgcggccuCGGGGGCg -3'
miRNA:   3'- gGCGUAGGaCUGCG---CGCG-----------GCCCCUGg -5'
23802 3' -61.4 NC_005261.1 + 84976 0.66 0.685523
Target:  5'- gCGCGUCC--GCGaUGCGCCGGcGcACCc -3'
miRNA:   3'- gGCGUAGGacUGC-GCGCGGCC-CcUGG- -5'
23802 3' -61.4 NC_005261.1 + 115700 0.66 0.685523
Target:  5'- uCCGUGUCCgucguguaGACGUGCGCCacGGugUu -3'
miRNA:   3'- -GGCGUAGGa-------CUGCGCGCGGccCCugG- -5'
23802 3' -61.4 NC_005261.1 + 129313 0.66 0.685523
Target:  5'- cCCGCGccugCgCUGGCGcCGCGUCGccGACCu -3'
miRNA:   3'- -GGCGUa---G-GACUGC-GCGCGGCccCUGG- -5'
23802 3' -61.4 NC_005261.1 + 109465 0.66 0.684557
Target:  5'- cCCGCuUCgCgcguGCGCGCccgagcgcaaaugGCCGGGGcCCg -3'
miRNA:   3'- -GGCGuAG-Gac--UGCGCG-------------CGGCCCCuGG- -5'
23802 3' -61.4 NC_005261.1 + 21355 0.66 0.67972
Target:  5'- cCCGCcccuggcuugagcCCUGAC-CGCGCCGGaGGCg -3'
miRNA:   3'- -GGCGua-----------GGACUGcGCGCGGCCcCUGg -5'
23802 3' -61.4 NC_005261.1 + 19539 0.66 0.675844
Target:  5'- cCCGCGUCac--CGCcaGCGCCGuGGGgagcGCCa -3'
miRNA:   3'- -GGCGUAGgacuGCG--CGCGGC-CCC----UGG- -5'
23802 3' -61.4 NC_005261.1 + 93654 0.66 0.675844
Target:  5'- uCCGCguacgcccaccgGUCCgcgGGCgGCgGCGCCGGcGGggcGCCg -3'
miRNA:   3'- -GGCG------------UAGGa--CUG-CG-CGCGGCC-CC---UGG- -5'
23802 3' -61.4 NC_005261.1 + 50573 0.66 0.675844
Target:  5'- aCGCG-CCUGGCGUcCGCCgcgagcGGGGAg- -3'
miRNA:   3'- gGCGUaGGACUGCGcGCGG------CCCCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.