miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 16394 0.65 0.622948
Target:  5'- cGCCGUCGUCGUcGCCGggcggugcgggagagGCCCCCUc -3'
miRNA:   3'- cUGGCGGCAGCAcUGGUgg-------------CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 72972 0.66 0.620039
Target:  5'- cGCCGCCGcggggguccgcgagCGcGGCCAgcgcguccgcguCCGCCCaCCCc -3'
miRNA:   3'- cUGGCGGCa-------------GCaCUGGU------------GGCGGG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 109992 0.66 0.620039
Target:  5'- cGGCagGUCGUCGUGgacacgcccgccggcGCCGCCGUCCUUUc -3'
miRNA:   3'- -CUGg-CGGCAGCAC---------------UGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 107676 0.66 0.616161
Target:  5'- -cCCGCCGggCGUuGCCGCCGCggcgggggcgCCgCCg -3'
miRNA:   3'- cuGGCGGCa-GCAcUGGUGGCG----------GGgGG- -5'
23803 5' -63.2 NC_005261.1 + 63744 0.66 0.616161
Target:  5'- uGGCCGCgGcggCGUaGGCCGCCGUgUagCCCa -3'
miRNA:   3'- -CUGGCGgCa--GCA-CUGGUGGCGgG--GGG- -5'
23803 5' -63.2 NC_005261.1 + 113562 0.66 0.616161
Target:  5'- gGACCGCgagcagugGUCgGUGGCCGCCGCgcugggcgaCCUCg -3'
miRNA:   3'- -CUGGCGg-------CAG-CACUGGUGGCGg--------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 97016 0.66 0.616161
Target:  5'- gGGCgGgCCGUCG-GGCgCGCCcgGCCgCCCa -3'
miRNA:   3'- -CUGgC-GGCAGCaCUG-GUGG--CGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 110375 0.66 0.606474
Target:  5'- cGACCGCCGcauggcgcugCGgcugGACCGCuucuaCGCCUgCCu -3'
miRNA:   3'- -CUGGCGGCa---------GCa---CUGGUG-----GCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 116162 0.66 0.606474
Target:  5'- aGCgCGCgGUCGcGGCCG-CGUCCCCg -3'
miRNA:   3'- cUG-GCGgCAGCaCUGGUgGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 68182 0.66 0.606474
Target:  5'- cGCgCGCCG-CG-GGCCcccUCGCCCCCg -3'
miRNA:   3'- cUG-GCGGCaGCaCUGGu--GGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 3517 0.66 0.606474
Target:  5'- cGGCCGCCuccagCGcGGCgGCCGCCUCg- -3'
miRNA:   3'- -CUGGCGGca---GCaCUGgUGGCGGGGgg -5'
23803 5' -63.2 NC_005261.1 + 100237 0.66 0.606474
Target:  5'- cACCGCCGggCGcacGuCUGCCaGCCCCCa -3'
miRNA:   3'- cUGGCGGCa-GCa--CuGGUGG-CGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 61286 0.66 0.606474
Target:  5'- -cCCGCCGagacgCGcuucuACCACUGCCgCCCa -3'
miRNA:   3'- cuGGCGGCa----GCac---UGGUGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 35019 0.66 0.606474
Target:  5'- cGGCCGgCGUCucggucgcUGGCgCGCCGCCCUa- -3'
miRNA:   3'- -CUGGCgGCAGc-------ACUG-GUGGCGGGGgg -5'
23803 5' -63.2 NC_005261.1 + 111355 0.66 0.606474
Target:  5'- cGCCGaCCG-CGcGuCUGCUGCCCCCg -3'
miRNA:   3'- cUGGC-GGCaGCaCuGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 84284 0.66 0.606474
Target:  5'- uGCCGCCGgc--GGCC-CCGgCCCCg -3'
miRNA:   3'- cUGGCGGCagcaCUGGuGGCgGGGGg -5'
23803 5' -63.2 NC_005261.1 + 124239 0.66 0.605506
Target:  5'- aACCGCCGcCGcgGGCaggcgccgcgcggCGCCGCCcgcgcgCCCCg -3'
miRNA:   3'- cUGGCGGCaGCa-CUG-------------GUGGCGG------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 78033 0.66 0.600669
Target:  5'- cGCCGCUccgccccagccggugGUCGcgGGCC-CgGCCCCCg -3'
miRNA:   3'- cUGGCGG---------------CAGCa-CUGGuGgCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 70869 0.66 0.599702
Target:  5'- cGGCCGCCGUggCGUGGCCggcggugcacaugGCCGUgCacuugcgcgccacguCCCg -3'
miRNA:   3'- -CUGGCGGCA--GCACUGG-------------UGGCGgG---------------GGG- -5'
23803 5' -63.2 NC_005261.1 + 133292 0.66 0.596804
Target:  5'- -cCCGCC-UCGUGGCCGCCaaggacgacugGCUgCUCg -3'
miRNA:   3'- cuGGCGGcAGCACUGGUGG-----------CGGgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.