miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23805 5' -54.3 NC_005261.1 + 138220 0.68 0.825146
Target:  5'- --gGACgGCGGCUcgGCcgCCGCGCGGUg -3'
miRNA:   3'- aagCUGgUGUCGA--UGaaGGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 135277 0.67 0.881662
Target:  5'- -gCGGCCugugcagaACGGCgGgUUCCGCGCGAc -3'
miRNA:   3'- aaGCUGG--------UGUCGaUgAAGGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 134568 0.68 0.83385
Target:  5'- -gCGgcGCCGCGGCUGCgcagggcgggCCugGCGAg -3'
miRNA:   3'- aaGC--UGGUGUCGAUGaa--------GGugCGCUa -5'
23805 5' -54.3 NC_005261.1 + 123715 0.66 0.915035
Target:  5'- cUCGGCCAuCAGCaGCgUCguCGCGGUc -3'
miRNA:   3'- aAGCUGGU-GUCGaUGaAGguGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 122359 0.66 0.920953
Target:  5'- -gCGGCCGCGGCUcgcGCggccCCACcGCGGc -3'
miRNA:   3'- aaGCUGGUGUCGA---UGaa--GGUG-CGCUa -5'
23805 5' -54.3 NC_005261.1 + 109791 0.68 0.828651
Target:  5'- -cCGGCCGCuGCUgcgacggccggcgccGCUUCCGcCGCGGc -3'
miRNA:   3'- aaGCUGGUGuCGA---------------UGAAGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 107907 0.67 0.866614
Target:  5'- -gCGGCCGCGGCcucgGCcacgagugCCGCGCGGa -3'
miRNA:   3'- aaGCUGGUGUCGa---UGaa------GGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 107495 0.66 0.920953
Target:  5'- -gCGGCaGCAGCUGCg-CCACGCa-- -3'
miRNA:   3'- aaGCUGgUGUCGAUGaaGGUGCGcua -5'
23805 5' -54.3 NC_005261.1 + 106300 0.66 0.902435
Target:  5'- gUCGACCuCGGCgagcagguCUUCCGuCGUGAg -3'
miRNA:   3'- aAGCUGGuGUCGau------GAAGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 105231 0.71 0.692012
Target:  5'- -gCGGCCGCGGCcgugaucugcggcgGCaUCCGCGCGAc -3'
miRNA:   3'- aaGCUGGUGUCGa-------------UGaAGGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 104113 0.69 0.769277
Target:  5'- -gCGACCGCAGCcGCgcggUUCGcCGCGAg -3'
miRNA:   3'- aaGCUGGUGUCGaUGa---AGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 102632 0.69 0.778975
Target:  5'- cUCGGCCGCGGCUucgUCCGCGg--- -3'
miRNA:   3'- aAGCUGGUGUCGAugaAGGUGCgcua -5'
23805 5' -54.3 NC_005261.1 + 95597 0.71 0.676255
Target:  5'- cUCGcACCGCaccggccGGCUGCUggaCCGCGCGGUc -3'
miRNA:   3'- aAGC-UGGUG-------UCGAUGAa--GGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 95502 0.67 0.888831
Target:  5'- aUCGAcCCGCGGCca-UUCCGCGCc-- -3'
miRNA:   3'- aAGCU-GGUGUCGaugAAGGUGCGcua -5'
23805 5' -54.3 NC_005261.1 + 88505 0.67 0.895756
Target:  5'- cUCGACC-CGcGCUucgagcGCUUCCACGUGu- -3'
miRNA:   3'- aAGCUGGuGU-CGA------UGAAGGUGCGCua -5'
23805 5' -54.3 NC_005261.1 + 88438 0.7 0.729272
Target:  5'- --gGGCCACcGCUGCUggccgcgCCGCGUGAg -3'
miRNA:   3'- aagCUGGUGuCGAUGAa------GGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 83612 0.66 0.926614
Target:  5'- cUCcGCCGCGGCguggUCCAgCGCGAg -3'
miRNA:   3'- aAGcUGGUGUCGaugaAGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 74685 0.67 0.866614
Target:  5'- -gCGACCgcGCGGgaGCUggccgCCGCGCGGg -3'
miRNA:   3'- aaGCUGG--UGUCgaUGAa----GGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 74549 0.66 0.915035
Target:  5'- gUUUGccuGCCugGGCguggACaUCCACGCGGUc -3'
miRNA:   3'- -AAGC---UGGugUCGa---UGaAGGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 71111 0.66 0.915035
Target:  5'- -aCGGCgCGCAGCuUGCgcCCGCGCGc- -3'
miRNA:   3'- aaGCUG-GUGUCG-AUGaaGGUGCGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.