miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 74405 0.66 0.888881
Target:  5'- cCCCGUUUUcgGCCGcGGGCgggaggGCCGAg -3'
miRNA:   3'- -GGGCGAAGa-UGGC-CUCGaag---CGGCUg -5'
23808 5' -56.8 NC_005261.1 + 109815 0.72 0.526416
Target:  5'- gCCGCUUCcGCCGcGGCggcCGCCGAa -3'
miRNA:   3'- gGGCGAAGaUGGCcUCGaa-GCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 127331 0.72 0.536236
Target:  5'- gCCCGCggggGCCGGAGCggcggggCGCUGGg -3'
miRNA:   3'- -GGGCGaagaUGGCCUCGaa-----GCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 17937 0.72 0.56505
Target:  5'- gCCCGCUggCguuCCGGAacaugucGCUUCGUCGAa -3'
miRNA:   3'- -GGGCGAa-Gau-GGCCU-------CGAAGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 58338 0.71 0.596277
Target:  5'- aCCGCcUCg--CGGAGCcgCGCCGGCc -3'
miRNA:   3'- gGGCGaAGaugGCCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 129312 0.71 0.596277
Target:  5'- cCCCGCgcCUgcGCUGGcGCcgcgUCGCCGACc -3'
miRNA:   3'- -GGGCGaaGA--UGGCCuCGa---AGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 36156 0.71 0.606414
Target:  5'- gCUCGCgcaUGCgCGGGGCUUuuaugcCGCCGGCa -3'
miRNA:   3'- -GGGCGaagAUG-GCCUCGAA------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 31419 0.71 0.606414
Target:  5'- aCCCGCUgc--CCGGGGaggCGCUGGCg -3'
miRNA:   3'- -GGGCGAagauGGCCUCgaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 3817 0.71 0.616569
Target:  5'- gCUCGCgcgCUGCCGcGGGCccgggCGCUGGCg -3'
miRNA:   3'- -GGGCGaa-GAUGGC-CUCGaa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 32251 0.73 0.516664
Target:  5'- gCCGCg-CUGCUGGAGCcgcaCGCCGAg -3'
miRNA:   3'- gGGCGaaGAUGGCCUCGaa--GCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 129211 0.73 0.506986
Target:  5'- gCUGCUUCUGCUGGuGCggCGCCu-- -3'
miRNA:   3'- gGGCGAAGAUGGCCuCGaaGCGGcug -5'
23808 5' -56.8 NC_005261.1 + 131950 0.73 0.469096
Target:  5'- gCCCGCgcccgUCUACCggguGGAGCUgcCGCgCGGCc -3'
miRNA:   3'- -GGGCGa----AGAUGG----CCUCGAa-GCG-GCUG- -5'
23808 5' -56.8 NC_005261.1 + 69509 0.77 0.312324
Target:  5'- gCCgGCggcgggCUGCCGGAGCUggcgcgggCGCUGGCg -3'
miRNA:   3'- -GGgCGaa----GAUGGCCUCGAa-------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 88163 0.76 0.326809
Target:  5'- gCCGCgcagCcggGCCGGGGCgaCGCCGGCg -3'
miRNA:   3'- gGGCGaa--Ga--UGGCCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 33586 0.76 0.349458
Target:  5'- cCCCGCgagC-ACCaGGGGCggCGCCGGCg -3'
miRNA:   3'- -GGGCGaa-GaUGG-CCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 9516 0.75 0.38963
Target:  5'- cCCCGCcgaCgaucCUGGAGCcUCGCCGACg -3'
miRNA:   3'- -GGGCGaa-Gau--GGCCUCGaAGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 119214 0.75 0.415142
Target:  5'- gCCCGCcauggccCUGCCGGGGCgagcgUgGCCGAUc -3'
miRNA:   3'- -GGGCGaa-----GAUGGCCUCGa----AgCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 77311 0.74 0.423871
Target:  5'- -aCGCgcaCgccaGCCGGAGCUUCcGCCGGCg -3'
miRNA:   3'- ggGCGaa-Ga---UGGCCUCGAAG-CGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 120244 0.74 0.441653
Target:  5'- gCCGCUUC-GCCGcGGCUgccaCGCCGGCc -3'
miRNA:   3'- gGGCGAAGaUGGCcUCGAa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 35665 0.73 0.469096
Target:  5'- uCCCGCUccCUGCCGGccGCaccccCGCCGGCg -3'
miRNA:   3'- -GGGCGAa-GAUGGCCu-CGaa---GCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.