Results 1 - 20 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 131414 | 0.86 | 0.085079 |
Target: 5'- cCCCGCcgCUGCCGGcAGCggCGCCGGCg -3' miRNA: 3'- -GGGCGaaGAUGGCC-UCGaaGCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 69509 | 0.77 | 0.312324 |
Target: 5'- gCCgGCggcgggCUGCCGGAGCUggcgcgggCGCUGGCg -3' miRNA: 3'- -GGgCGaa----GAUGGCCUCGAa-------GCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 88163 | 0.76 | 0.326809 |
Target: 5'- gCCGCgcagCcggGCCGGGGCgaCGCCGGCg -3' miRNA: 3'- gGGCGaa--Ga--UGGCCUCGaaGCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 33586 | 0.76 | 0.349458 |
Target: 5'- cCCCGCgagC-ACCaGGGGCggCGCCGGCg -3' miRNA: 3'- -GGGCGaa-GaUGG-CCUCGaaGCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 9516 | 0.75 | 0.38963 |
Target: 5'- cCCCGCcgaCgaucCUGGAGCcUCGCCGACg -3' miRNA: 3'- -GGGCGaa-Gau--GGCCUCGaAGCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 119214 | 0.75 | 0.415142 |
Target: 5'- gCCCGCcauggccCUGCCGGGGCgagcgUgGCCGAUc -3' miRNA: 3'- -GGGCGaa-----GAUGGCCUCGa----AgCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 77311 | 0.74 | 0.423871 |
Target: 5'- -aCGCgcaCgccaGCCGGAGCUUCcGCCGGCg -3' miRNA: 3'- ggGCGaa-Ga---UGGCCUCGAAG-CGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 120244 | 0.74 | 0.441653 |
Target: 5'- gCCGCUUC-GCCGcGGCUgccaCGCCGGCc -3' miRNA: 3'- gGGCGAAGaUGGCcUCGAa---GCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 35665 | 0.73 | 0.469096 |
Target: 5'- uCCCGCUccCUGCCGGccGCaccccCGCCGGCg -3' miRNA: 3'- -GGGCGAa-GAUGGCCu-CGaa---GCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 131950 | 0.73 | 0.469096 |
Target: 5'- gCCCGCgcccgUCUACCggguGGAGCUgcCGCgCGGCc -3' miRNA: 3'- -GGGCGa----AGAUGG----CCUCGAa-GCG-GCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 129211 | 0.73 | 0.506986 |
Target: 5'- gCUGCUUCUGCUGGuGCggCGCCu-- -3' miRNA: 3'- gGGCGAAGAUGGCCuCGaaGCGGcug -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 32251 | 0.73 | 0.516664 |
Target: 5'- gCCGCg-CUGCUGGAGCcgcaCGCCGAg -3' miRNA: 3'- gGGCGaaGAUGGCCUCGaa--GCGGCUg -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 109815 | 0.72 | 0.526416 |
Target: 5'- gCCGCUUCcGCCGcGGCggcCGCCGAa -3' miRNA: 3'- gGGCGAAGaUGGCcUCGaa-GCGGCUg -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 127331 | 0.72 | 0.536236 |
Target: 5'- gCCCGCggggGCCGGAGCggcggggCGCUGGg -3' miRNA: 3'- -GGGCGaagaUGGCCUCGaa-----GCGGCUg -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 17937 | 0.72 | 0.56505 |
Target: 5'- gCCCGCUggCguuCCGGAacaugucGCUUCGUCGAa -3' miRNA: 3'- -GGGCGAa-Gau-GGCCU-------CGAAGCGGCUg -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 58338 | 0.71 | 0.596277 |
Target: 5'- aCCGCcUCg--CGGAGCcgCGCCGGCc -3' miRNA: 3'- gGGCGaAGaugGCCUCGaaGCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 129312 | 0.71 | 0.596277 |
Target: 5'- cCCCGCgcCUgcGCUGGcGCcgcgUCGCCGACc -3' miRNA: 3'- -GGGCGaaGA--UGGCCuCGa---AGCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 36156 | 0.71 | 0.606414 |
Target: 5'- gCUCGCgcaUGCgCGGGGCUUuuaugcCGCCGGCa -3' miRNA: 3'- -GGGCGaagAUG-GCCUCGAA------GCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 31419 | 0.71 | 0.606414 |
Target: 5'- aCCCGCUgc--CCGGGGaggCGCUGGCg -3' miRNA: 3'- -GGGCGAagauGGCCUCgaaGCGGCUG- -5' |
|||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 3817 | 0.71 | 0.616569 |
Target: 5'- gCUCGCgcgCUGCCGcGGGCccgggCGCUGGCg -3' miRNA: 3'- -GGGCGaa-GAUGGC-CUCGaa---GCGGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home