miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 132878 0.66 0.850083
Target:  5'- gCCUGCccUUCUucggcaagccgggcGCCGcGGGCggCGCCGAg -3'
miRNA:   3'- -GGGCG--AAGA--------------UGGC-CUCGaaGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 2778 0.66 0.866161
Target:  5'- gCCCGCccccga-GGGGCUgcCGCCGGCg -3'
miRNA:   3'- -GGGCGaagauggCCUCGAa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 132929 0.66 0.860141
Target:  5'- uCCUGCccUUCUACgUGGuccccgAGCgcugCGCCGACg -3'
miRNA:   3'- -GGGCG--AAGAUG-GCC------UCGaa--GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 51465 0.66 0.860141
Target:  5'- gCCgGCggUCUGCUGGcGCUgaUCaCCGGCg -3'
miRNA:   3'- -GGgCGa-AGAUGGCCuCGA--AGcGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 88580 0.66 0.852434
Target:  5'- uCCCGCUUCgccGCCGaGGCccggC-CCGGCg -3'
miRNA:   3'- -GGGCGAAGa--UGGCcUCGaa--GcGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 51755 0.66 0.852434
Target:  5'- gCCGCUg--GCCGuGaAGCUggCGCUGGCc -3'
miRNA:   3'- gGGCGAagaUGGC-C-UCGAa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 50943 0.66 0.856312
Target:  5'- cCCUGCUUCUACgCGGccguggucgacuacGGCgcgcgaaaccucUCGgCCGACg -3'
miRNA:   3'- -GGGCGAAGAUG-GCC--------------UCGa-----------AGC-GGCUG- -5'
23808 5' -56.8 NC_005261.1 + 58761 0.66 0.860141
Target:  5'- uCCCGC----GCCGaGAGCgcccccagcgCGCCGGCc -3'
miRNA:   3'- -GGGCGaagaUGGC-CUCGaa--------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 135180 0.66 0.867645
Target:  5'- gCUCGCUgcggCUcGCgCGGAGCaUgGCCGAg -3'
miRNA:   3'- -GGGCGAa---GA-UG-GCCUCGaAgCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 76766 0.66 0.852434
Target:  5'- cCCCGCgUUCUucgGCgCGGAcGCccccgCGCUGGCg -3'
miRNA:   3'- -GGGCG-AAGA---UG-GCCU-CGaa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 9330 0.66 0.852434
Target:  5'- cCCCGCcgCcgacgagcccACCgGGAGCacCGCCGACg -3'
miRNA:   3'- -GGGCGaaGa---------UGG-CCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 118083 0.66 0.852434
Target:  5'- gCCGCgcucgUCUGCUGGcGGCc-CGCCGcGCa -3'
miRNA:   3'- gGGCGa----AGAUGGCC-UCGaaGCGGC-UG- -5'
23808 5' -56.8 NC_005261.1 + 59218 0.66 0.863167
Target:  5'- gCCCGUcUCguagUGCCGccgggccacgagcgaGAGCgggCGCCGGCg -3'
miRNA:   3'- -GGGCGaAG----AUGGC---------------CUCGaa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 117689 0.66 0.852434
Target:  5'- gCCCGCggCgagGCCGGccCUgagGCCGGCg -3'
miRNA:   3'- -GGGCGaaGa--UGGCCucGAag-CGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 30982 0.66 0.861658
Target:  5'- gCCGCggcgcaagcgcaagUCgGCCGGGGCcaggggcccggCGCCGGCc -3'
miRNA:   3'- gGGCGa-------------AGaUGGCCUCGaa---------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 14363 0.66 0.867645
Target:  5'- gCCGCg---GCCGGGGCggCGCggUGGCc -3'
miRNA:   3'- gGGCGaagaUGGCCUCGaaGCG--GCUG- -5'
23808 5' -56.8 NC_005261.1 + 131013 0.66 0.852434
Target:  5'- aCgCGCUUCUacguguuccagGCC-GAGCg-CGCCGGCg -3'
miRNA:   3'- -GgGCGAAGA-----------UGGcCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 74405 0.66 0.888881
Target:  5'- cCCCGUUUUcgGCCGcGGGCgggaggGCCGAg -3'
miRNA:   3'- -GGGCGAAGa-UGGC-CUCGaag---CGGCUg -5'
23808 5' -56.8 NC_005261.1 + 68204 0.66 0.852434
Target:  5'- cCCCGCc---GCCGGcGCg--GCCGACa -3'
miRNA:   3'- -GGGCGaagaUGGCCuCGaagCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 77529 0.66 0.860141
Target:  5'- cCCCGCccccgaUGCCGG-GCUgguacggCGCCGcCg -3'
miRNA:   3'- -GGGCGaag---AUGGCCuCGAa------GCGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.