Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23808 | 5' | -56.8 | NC_005261.1 | + | 132878 | 0.66 | 0.850083 |
Target: 5'- gCCUGCccUUCUucggcaagccgggcGCCGcGGGCggCGCCGAg -3' miRNA: 3'- -GGGCG--AAGA--------------UGGC-CUCGaaGCGGCUg -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 54871 | 0.66 | 0.87494 |
Target: 5'- aCCCGCacg-GCCGGAuGaugCGUCGGCg -3' miRNA: 3'- -GGGCGaagaUGGCCU-CgaaGCGGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 59218 | 0.66 | 0.863167 |
Target: 5'- gCCCGUcUCguagUGCCGccgggccacgagcgaGAGCgggCGCCGGCg -3' miRNA: 3'- -GGGCGaAG----AUGGC---------------CUCGaa-GCGGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 59462 | 0.66 | 0.888881 |
Target: 5'- gCCGCggcgUCgg--GGGGCagCGCCGGCg -3' miRNA: 3'- gGGCGa---AGauggCCUCGaaGCGGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 50943 | 0.66 | 0.856312 |
Target: 5'- cCCUGCUUCUACgCGGccguggucgacuacGGCgcgcgaaaccucUCGgCCGACg -3' miRNA: 3'- -GGGCGAAGAUG-GCC--------------UCGa-----------AGC-GGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 77529 | 0.66 | 0.860141 |
Target: 5'- cCCCGCccccgaUGCCGG-GCUgguacggCGCCGcCg -3' miRNA: 3'- -GGGCGaag---AUGGCCuCGAa------GCGGCuG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 117406 | 0.66 | 0.88202 |
Target: 5'- gCCCGaCUUUcgGCUGGAGCUggagucccccUCGggguuCCGGCg -3' miRNA: 3'- -GGGC-GAAGa-UGGCCUCGA----------AGC-----GGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 31082 | 0.66 | 0.888205 |
Target: 5'- gCCCGCgugCUGggccccaugccgcCCGGcGGCcccgcCGCCGACg -3' miRNA: 3'- -GGGCGaa-GAU-------------GGCC-UCGaa---GCGGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 83075 | 0.66 | 0.866904 |
Target: 5'- cCCCGCggCgGCCGGcGCUUccagcgccuccagCGCCGcCg -3' miRNA: 3'- -GGGCGaaGaUGGCCuCGAA-------------GCGGCuG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 30982 | 0.66 | 0.861658 |
Target: 5'- gCCGCggcgcaagcgcaagUCgGCCGGGGCcaggggcccggCGCCGGCc -3' miRNA: 3'- gGGCGa-------------AGaUGGCCUCGaa---------GCGGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 100908 | 0.66 | 0.88202 |
Target: 5'- gCCGCgcaCcGCCGcGAGCgUCGCCuGCa -3' miRNA: 3'- gGGCGaa-GaUGGC-CUCGaAGCGGcUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 118083 | 0.66 | 0.852434 |
Target: 5'- gCCGCgcucgUCUGCUGGcGGCc-CGCCGcGCa -3' miRNA: 3'- gGGCGa----AGAUGGCC-UCGaaGCGGC-UG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 134308 | 0.66 | 0.88202 |
Target: 5'- gCCGcCUUCgccgcGCUGGAGCUggucUCGCUG-Cu -3' miRNA: 3'- gGGC-GAAGa----UGGCCUCGA----AGCGGCuG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 38680 | 0.66 | 0.888205 |
Target: 5'- gCCCGCcagUCUcgcgcugGCCGG-GCccaaGCCGGCc -3' miRNA: 3'- -GGGCGa--AGA-------UGGCCuCGaag-CGGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 135180 | 0.66 | 0.867645 |
Target: 5'- gCUCGCUgcggCUcGCgCGGAGCaUgGCCGAg -3' miRNA: 3'- -GGGCGAa---GA-UG-GCCUCGaAgCGGCUg -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 93829 | 0.66 | 0.87494 |
Target: 5'- gCCGCagCcGCCGGgcGGCgcCGCCGAg -3' miRNA: 3'- gGGCGaaGaUGGCC--UCGaaGCGGCUg -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 68204 | 0.66 | 0.852434 |
Target: 5'- cCCCGCc---GCCGGcGCg--GCCGACa -3' miRNA: 3'- -GGGCGaagaUGGCCuCGaagCGGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 95777 | 0.66 | 0.88202 |
Target: 5'- cCUCGCgcgCUgcGCCGGcgcGCUgcuagccggCGCCGGCg -3' miRNA: 3'- -GGGCGaa-GA--UGGCCu--CGAa--------GCGGCUG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 102962 | 0.66 | 0.88202 |
Target: 5'- gCCGCgggcGCCGcGGGCUcCGCCGcCg -3' miRNA: 3'- gGGCGaagaUGGC-CUCGAaGCGGCuG- -5' |
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23808 | 5' | -56.8 | NC_005261.1 | + | 28568 | 0.67 | 0.802296 |
Target: 5'- gCCCGCcgg-GCCGaGGCgcgcgagCGCCGGCg -3' miRNA: 3'- -GGGCGaagaUGGCcUCGaa-----GCGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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