miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 132878 0.66 0.850083
Target:  5'- gCCUGCccUUCUucggcaagccgggcGCCGcGGGCggCGCCGAg -3'
miRNA:   3'- -GGGCG--AAGA--------------UGGC-CUCGaaGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 54871 0.66 0.87494
Target:  5'- aCCCGCacg-GCCGGAuGaugCGUCGGCg -3'
miRNA:   3'- -GGGCGaagaUGGCCU-CgaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 59218 0.66 0.863167
Target:  5'- gCCCGUcUCguagUGCCGccgggccacgagcgaGAGCgggCGCCGGCg -3'
miRNA:   3'- -GGGCGaAG----AUGGC---------------CUCGaa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 59462 0.66 0.888881
Target:  5'- gCCGCggcgUCgg--GGGGCagCGCCGGCg -3'
miRNA:   3'- gGGCGa---AGauggCCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 50943 0.66 0.856312
Target:  5'- cCCUGCUUCUACgCGGccguggucgacuacGGCgcgcgaaaccucUCGgCCGACg -3'
miRNA:   3'- -GGGCGAAGAUG-GCC--------------UCGa-----------AGC-GGCUG- -5'
23808 5' -56.8 NC_005261.1 + 77529 0.66 0.860141
Target:  5'- cCCCGCccccgaUGCCGG-GCUgguacggCGCCGcCg -3'
miRNA:   3'- -GGGCGaag---AUGGCCuCGAa------GCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 117406 0.66 0.88202
Target:  5'- gCCCGaCUUUcgGCUGGAGCUggagucccccUCGggguuCCGGCg -3'
miRNA:   3'- -GGGC-GAAGa-UGGCCUCGA----------AGC-----GGCUG- -5'
23808 5' -56.8 NC_005261.1 + 31082 0.66 0.888205
Target:  5'- gCCCGCgugCUGggccccaugccgcCCGGcGGCcccgcCGCCGACg -3'
miRNA:   3'- -GGGCGaa-GAU-------------GGCC-UCGaa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 83075 0.66 0.866904
Target:  5'- cCCCGCggCgGCCGGcGCUUccagcgccuccagCGCCGcCg -3'
miRNA:   3'- -GGGCGaaGaUGGCCuCGAA-------------GCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 30982 0.66 0.861658
Target:  5'- gCCGCggcgcaagcgcaagUCgGCCGGGGCcaggggcccggCGCCGGCc -3'
miRNA:   3'- gGGCGa-------------AGaUGGCCUCGaa---------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 100908 0.66 0.88202
Target:  5'- gCCGCgcaCcGCCGcGAGCgUCGCCuGCa -3'
miRNA:   3'- gGGCGaa-GaUGGC-CUCGaAGCGGcUG- -5'
23808 5' -56.8 NC_005261.1 + 118083 0.66 0.852434
Target:  5'- gCCGCgcucgUCUGCUGGcGGCc-CGCCGcGCa -3'
miRNA:   3'- gGGCGa----AGAUGGCC-UCGaaGCGGC-UG- -5'
23808 5' -56.8 NC_005261.1 + 134308 0.66 0.88202
Target:  5'- gCCGcCUUCgccgcGCUGGAGCUggucUCGCUG-Cu -3'
miRNA:   3'- gGGC-GAAGa----UGGCCUCGA----AGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 38680 0.66 0.888205
Target:  5'- gCCCGCcagUCUcgcgcugGCCGG-GCccaaGCCGGCc -3'
miRNA:   3'- -GGGCGa--AGA-------UGGCCuCGaag-CGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 135180 0.66 0.867645
Target:  5'- gCUCGCUgcggCUcGCgCGGAGCaUgGCCGAg -3'
miRNA:   3'- -GGGCGAa---GA-UG-GCCUCGaAgCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 93829 0.66 0.87494
Target:  5'- gCCGCagCcGCCGGgcGGCgcCGCCGAg -3'
miRNA:   3'- gGGCGaaGaUGGCC--UCGaaGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 68204 0.66 0.852434
Target:  5'- cCCCGCc---GCCGGcGCg--GCCGACa -3'
miRNA:   3'- -GGGCGaagaUGGCCuCGaagCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 95777 0.66 0.88202
Target:  5'- cCUCGCgcgCUgcGCCGGcgcGCUgcuagccggCGCCGGCg -3'
miRNA:   3'- -GGGCGaa-GA--UGGCCu--CGAa--------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 102962 0.66 0.88202
Target:  5'- gCCGCgggcGCCGcGGGCUcCGCCGcCg -3'
miRNA:   3'- gGGCGaagaUGGC-CUCGAaGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 28568 0.67 0.802296
Target:  5'- gCCCGCcgg-GCCGaGGCgcgcgagCGCCGGCg -3'
miRNA:   3'- -GGGCGaagaUGGCcUCGaa-----GCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.