miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 13054 0.71 0.616569
Target:  5'- gCCGCgcgcgcccCUGCCGGGcGCgucCGCCGGCc -3'
miRNA:   3'- gGGCGaa------GAUGGCCU-CGaa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 52968 0.71 0.616569
Target:  5'- gCCGC----GCCGGuGCggCGCCGGCa -3'
miRNA:   3'- gGGCGaagaUGGCCuCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 3817 0.71 0.616569
Target:  5'- gCUCGCgcgCUGCCGcGGGCccgggCGCUGGCg -3'
miRNA:   3'- -GGGCGaa-GAUGGC-CUCGaa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 119277 0.71 0.616569
Target:  5'- gCUCGCUgg-GCgGGGGC-UCGCCGAg -3'
miRNA:   3'- -GGGCGAagaUGgCCUCGaAGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 97397 0.7 0.636907
Target:  5'- uUCGCgcCUGCCGcGGGCUUgGCgGGCg -3'
miRNA:   3'- gGGCGaaGAUGGC-CUCGAAgCGgCUG- -5'
23808 5' -56.8 NC_005261.1 + 90071 0.7 0.651138
Target:  5'- cCCCGCgggcGCCGaGGGCagcgacgggggcccgUUCGCCGGCu -3'
miRNA:   3'- -GGGCGaagaUGGC-CUCG---------------AAGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 20473 0.7 0.65723
Target:  5'- -gCGCUUcCUugCGGAGCaaagccgagCGCUGACa -3'
miRNA:   3'- ggGCGAA-GAugGCCUCGaa-------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 133714 0.7 0.65723
Target:  5'- cCCCgGCgccgUCUACguCGGGGCggCGCgGACa -3'
miRNA:   3'- -GGG-CGa---AGAUG--GCCUCGaaGCGgCUG- -5'
23808 5' -56.8 NC_005261.1 + 16370 0.7 0.65723
Target:  5'- cCCCGCcgccUUCU-CCGuGGGCcUCGCCGuCg -3'
miRNA:   3'- -GGGCG----AAGAuGGC-CUCGaAGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 20541 0.7 0.667365
Target:  5'- aCCGCgcUCUGCUGGAcguggcggcggGCUgcgcagcggCGCCGGCg -3'
miRNA:   3'- gGGCGa-AGAUGGCCU-----------CGAa--------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 94722 0.7 0.675454
Target:  5'- gCCGCUacCU-CCGGGGCggggacaccgaCGCCGACg -3'
miRNA:   3'- gGGCGAa-GAuGGCCUCGaa---------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 130538 0.7 0.687543
Target:  5'- gCCCGCUcgucgcguuuuaUCUGCUGG-GCggccCGCCGGg -3'
miRNA:   3'- -GGGCGA------------AGAUGGCCuCGaa--GCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 117493 0.7 0.687543
Target:  5'- -gCGCUUCUACCuu-GCgccCGCCGGCg -3'
miRNA:   3'- ggGCGAAGAUGGccuCGaa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 118990 0.69 0.693565
Target:  5'- -gUGCUUCUGCguCGGGGCcugcugggcccgCGCCGACg -3'
miRNA:   3'- ggGCGAAGAUG--GCCUCGaa----------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 74654 0.69 0.697569
Target:  5'- gCCCGuCUUCgcgcagGCCGGGGa--CGCgGACg -3'
miRNA:   3'- -GGGC-GAAGa-----UGGCCUCgaaGCGgCUG- -5'
23808 5' -56.8 NC_005261.1 + 130686 0.69 0.697569
Target:  5'- gCCCGCgcgcgugCUGCUcGAGCaccUCGCCGAg -3'
miRNA:   3'- -GGGCGaa-----GAUGGcCUCGa--AGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 47461 0.69 0.697569
Target:  5'- gCCCGCUUgcGCgGGGGCUgggcgaUGUCGGCg -3'
miRNA:   3'- -GGGCGAAgaUGgCCUCGAa-----GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 132778 0.69 0.697569
Target:  5'- gCCGUca-UGCUGGAGCgccccUUCGCCGAg -3'
miRNA:   3'- gGGCGaagAUGGCCUCG-----AAGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 107413 0.69 0.697569
Target:  5'- gCCGCcaggGCCGaGAGCUUCGuCCGGu -3'
miRNA:   3'- gGGCGaagaUGGC-CUCGAAGC-GGCUg -5'
23808 5' -56.8 NC_005261.1 + 3724 0.69 0.717448
Target:  5'- aCgCGCcgCUGCCGGAcg--CGCCGGCg -3'
miRNA:   3'- -GgGCGaaGAUGGCCUcgaaGCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.