miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 20473 0.7 0.65723
Target:  5'- -gCGCUUcCUugCGGAGCaaagccgagCGCUGACa -3'
miRNA:   3'- ggGCGAA-GAugGCCUCGaa-------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 20541 0.7 0.667365
Target:  5'- aCCGCgcUCUGCUGGAcguggcggcggGCUgcgcagcggCGCCGGCg -3'
miRNA:   3'- gGGCGa-AGAUGGCCU-----------CGAa--------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 21750 0.66 0.867645
Target:  5'- gCUGCUgCgcCUGGAGCgcgCGCCGGg -3'
miRNA:   3'- gGGCGAaGauGGCCUCGaa-GCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 23615 0.69 0.737039
Target:  5'- gCCGCcgCUGCCGGGGCg-CGgCGGg -3'
miRNA:   3'- gGGCGaaGAUGGCCUCGaaGCgGCUg -5'
23808 5' -56.8 NC_005261.1 + 24170 0.67 0.828156
Target:  5'- gUCGCaggCUuCCGGGGggUCGUCGGCg -3'
miRNA:   3'- gGGCGaa-GAuGGCCUCgaAGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 27706 0.67 0.844529
Target:  5'- -aCGCUc--GCCGGAGCccUCGCCG-Cg -3'
miRNA:   3'- ggGCGAagaUGGCCUCGa-AGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 28568 0.67 0.802296
Target:  5'- gCCCGCcgg-GCCGaGGCgcgcgagCGCCGGCg -3'
miRNA:   3'- -GGGCGaagaUGGCcUCGaa-----GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 28604 0.67 0.819702
Target:  5'- gCCCGCgccgagCUGgCGGAGCUguggCGCaugguGGCc -3'
miRNA:   3'- -GGGCGaa----GAUgGCCUCGAa---GCGg----CUG- -5'
23808 5' -56.8 NC_005261.1 + 29824 0.68 0.79336
Target:  5'- gCCCGCgccgcgCUcGCC-GAGCUgcgcgccgugcUCGCCGGCc -3'
miRNA:   3'- -GGGCGaa----GA-UGGcCUCGA-----------AGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 30982 0.66 0.861658
Target:  5'- gCCGCggcgcaagcgcaagUCgGCCGGGGCcaggggcccggCGCCGGCc -3'
miRNA:   3'- gGGCGa-------------AGaUGGCCUCGaa---------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 31082 0.66 0.888205
Target:  5'- gCCCGCgugCUGggccccaugccgcCCGGcGGCcccgcCGCCGACg -3'
miRNA:   3'- -GGGCGaa-GAU-------------GGCC-UCGaa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 31419 0.71 0.606414
Target:  5'- aCCCGCUgc--CCGGGGaggCGCUGGCg -3'
miRNA:   3'- -GGGCGAagauGGCCUCgaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 31520 0.67 0.836434
Target:  5'- -gCGCUgggCaACCGGcugcuGCUgagCGCCGACu -3'
miRNA:   3'- ggGCGAa--GaUGGCCu----CGAa--GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 31898 0.67 0.811079
Target:  5'- gCCGCUuacgcgcggcUCUAccCCGGGGCgcCGCCG-Cu -3'
miRNA:   3'- gGGCGA----------AGAU--GGCCUCGaaGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 32182 0.68 0.775068
Target:  5'- gCCUGCgggcggCgcgcGCUGGAGCUggCGcCCGACg -3'
miRNA:   3'- -GGGCGaa----Ga---UGGCCUCGAa-GC-GGCUG- -5'
23808 5' -56.8 NC_005261.1 + 32251 0.73 0.516664
Target:  5'- gCCGCg-CUGCUGGAGCcgcaCGCCGAg -3'
miRNA:   3'- gGGCGaaGAUGGCCUCGaa--GCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 32283 0.67 0.819702
Target:  5'- gCCGCUggUGCUGGAGgCgggCGCCGcCc -3'
miRNA:   3'- gGGCGAagAUGGCCUC-Gaa-GCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 32418 0.67 0.819702
Target:  5'- gCCGCcggCgACgGGAGCccCGCCGGCc -3'
miRNA:   3'- gGGCGaa-GaUGgCCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 33499 0.67 0.828156
Target:  5'- gCCCGCgagC-ACCaGGGGCggCGgCGGCa -3'
miRNA:   3'- -GGGCGaa-GaUGG-CCUCGaaGCgGCUG- -5'
23808 5' -56.8 NC_005261.1 + 33586 0.76 0.349458
Target:  5'- cCCCGCgagC-ACCaGGGGCggCGCCGGCg -3'
miRNA:   3'- -GGGCGaa-GaUGG-CCUCGaaGCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.