miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 1176 0.68 0.784281
Target:  5'- gCCCGCgcCgcgGCCGGGGCcgggGCCGGg -3'
miRNA:   3'- -GGGCGaaGa--UGGCCUCGaag-CGGCUg -5'
23808 5' -56.8 NC_005261.1 + 1280 0.68 0.775068
Target:  5'- gCCgGCgcccagGCCGGcggGGCUcccgUCGCCGGCg -3'
miRNA:   3'- -GGgCGaaga--UGGCC---UCGA----AGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 2778 0.66 0.866161
Target:  5'- gCCCGCccccga-GGGGCUgcCGCCGGCg -3'
miRNA:   3'- -GGGCGaagauggCCUCGAa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 3724 0.69 0.717448
Target:  5'- aCgCGCcgCUGCCGGAcg--CGCCGGCg -3'
miRNA:   3'- -GgGCGaaGAUGGCCUcgaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 3817 0.71 0.616569
Target:  5'- gCUCGCgcgCUGCCGcGGGCccgggCGCUGGCg -3'
miRNA:   3'- -GGGCGaa-GAUGGC-CUCGaa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 4410 0.67 0.811079
Target:  5'- gCgGCgcgCUGCCGGgccaGGCcUCGCCGGa -3'
miRNA:   3'- gGgCGaa-GAUGGCC----UCGaAGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 9330 0.66 0.852434
Target:  5'- cCCCGCcgCcgacgagcccACCgGGAGCacCGCCGACg -3'
miRNA:   3'- -GGGCGaaGa---------UGG-CCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 9516 0.75 0.38963
Target:  5'- cCCCGCcgaCgaucCUGGAGCcUCGCCGACg -3'
miRNA:   3'- -GGGCGaa-Gau--GGCCUCGaAGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 10096 0.67 0.844529
Target:  5'- cCCCGCcgCgccCCGGcAGCggCGgCGACa -3'
miRNA:   3'- -GGGCGaaGau-GGCC-UCGaaGCgGCUG- -5'
23808 5' -56.8 NC_005261.1 + 12639 0.67 0.802296
Target:  5'- uCCgGCgcgguCUGGGGCcgCGCCGGCg -3'
miRNA:   3'- -GGgCGaagauGGCCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 13054 0.71 0.616569
Target:  5'- gCCGCgcgcgcccCUGCCGGGcGCgucCGCCGGCc -3'
miRNA:   3'- gGGCGaa------GAUGGCCU-CGaa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 14239 0.67 0.828156
Target:  5'- aCCGCgccgGCCGGGGCcUUUGCCc-- -3'
miRNA:   3'- gGGCGaagaUGGCCUCG-AAGCGGcug -5'
23808 5' -56.8 NC_005261.1 + 14268 0.69 0.727284
Target:  5'- gUCgGCUUCgggGCUGGGGCUggggccaagGCCGGCc -3'
miRNA:   3'- -GGgCGAAGa--UGGCCUCGAag-------CGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 14363 0.66 0.867645
Target:  5'- gCCGCg---GCCGGGGCggCGCggUGGCc -3'
miRNA:   3'- gGGCGaagaUGGCCUCGaaGCG--GCUG- -5'
23808 5' -56.8 NC_005261.1 + 15493 0.69 0.737039
Target:  5'- gCCGCUcgCUGCgggCGGGGCgugUGUCGGCg -3'
miRNA:   3'- gGGCGAa-GAUG---GCCUCGaa-GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 15915 0.67 0.836434
Target:  5'- cCCCGCgca-GCCGGGGCcgggGCCGGg -3'
miRNA:   3'- -GGGCGaagaUGGCCUCGaag-CGGCUg -5'
23808 5' -56.8 NC_005261.1 + 16370 0.7 0.65723
Target:  5'- cCCCGCcgccUUCU-CCGuGGGCcUCGCCGuCg -3'
miRNA:   3'- -GGGCG----AAGAuGGC-CUCGaAGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 17937 0.72 0.56505
Target:  5'- gCCCGCUggCguuCCGGAacaugucGCUUCGUCGAa -3'
miRNA:   3'- -GGGCGAa-Gau-GGCCU-------CGAAGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 18326 0.69 0.737039
Target:  5'- uCCCGCUgUCguacagGCCGGGGCgcaGCaCGAg -3'
miRNA:   3'- -GGGCGA-AGa-----UGGCCUCGaagCG-GCUg -5'
23808 5' -56.8 NC_005261.1 + 20129 0.67 0.819702
Target:  5'- gCCCGCagCggcuCCGcGAGCgcucaggccgCGCCGGCu -3'
miRNA:   3'- -GGGCGaaGau--GGC-CUCGaa--------GCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.