miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 135180 0.66 0.867645
Target:  5'- gCUCGCUgcggCUcGCgCGGAGCaUgGCCGAg -3'
miRNA:   3'- -GGGCGAa---GA-UG-GCCUCGaAgCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 134308 0.66 0.88202
Target:  5'- gCCGcCUUCgccgcGCUGGAGCUggucUCGCUG-Cu -3'
miRNA:   3'- gGGC-GAAGa----UGGCCUCGA----AGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 134177 0.67 0.836434
Target:  5'- uCCCGCUgCUugCGGAggGCcUgGCgCGGCu -3'
miRNA:   3'- -GGGCGAaGAugGCCU--CGaAgCG-GCUG- -5'
23808 5' -56.8 NC_005261.1 + 133714 0.7 0.65723
Target:  5'- cCCCgGCgccgUCUACguCGGGGCggCGCgGACa -3'
miRNA:   3'- -GGG-CGa---AGAUG--GCCUCGaaGCGgCUG- -5'
23808 5' -56.8 NC_005261.1 + 133184 0.69 0.737039
Target:  5'- aCCGCggC-GCCgucgaGGAGUUcaUCGCCGACg -3'
miRNA:   3'- gGGCGaaGaUGG-----CCUCGA--AGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 132929 0.66 0.860141
Target:  5'- uCCUGCccUUCUACgUGGuccccgAGCgcugCGCCGACg -3'
miRNA:   3'- -GGGCG--AAGAUG-GCC------UCGaa--GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 132878 0.66 0.850083
Target:  5'- gCCUGCccUUCUucggcaagccgggcGCCGcGGGCggCGCCGAg -3'
miRNA:   3'- -GGGCG--AAGA--------------UGGC-CUCGaaGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 132778 0.69 0.697569
Target:  5'- gCCGUca-UGCUGGAGCgccccUUCGCCGAg -3'
miRNA:   3'- gGGCGaagAUGGCCUCG-----AAGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 131950 0.73 0.469096
Target:  5'- gCCCGCgcccgUCUACCggguGGAGCUgcCGCgCGGCc -3'
miRNA:   3'- -GGGCGa----AGAUGG----CCUCGAa-GCG-GCUG- -5'
23808 5' -56.8 NC_005261.1 + 131414 0.86 0.085079
Target:  5'- cCCCGCcgCUGCCGGcAGCggCGCCGGCg -3'
miRNA:   3'- -GGGCGaaGAUGGCC-UCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 131013 0.66 0.852434
Target:  5'- aCgCGCUUCUacguguuccagGCC-GAGCg-CGCCGGCg -3'
miRNA:   3'- -GgGCGAAGA-----------UGGcCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 130686 0.69 0.697569
Target:  5'- gCCCGCgcgcgugCUGCUcGAGCaccUCGCCGAg -3'
miRNA:   3'- -GGGCGaa-----GAUGGcCUCGa--AGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 130538 0.7 0.687543
Target:  5'- gCCCGCUcgucgcguuuuaUCUGCUGG-GCggccCGCCGGg -3'
miRNA:   3'- -GGGCGA------------AGAUGGCCuCGaa--GCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 129312 0.71 0.596277
Target:  5'- cCCCGCgcCUgcGCUGGcGCcgcgUCGCCGACc -3'
miRNA:   3'- -GGGCGaaGA--UGGCCuCGa---AGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 129211 0.73 0.506986
Target:  5'- gCUGCUUCUGCUGGuGCggCGCCu-- -3'
miRNA:   3'- gGGCGAAGAUGGCCuCGaaGCGGcug -5'
23808 5' -56.8 NC_005261.1 + 128560 0.66 0.888881
Target:  5'- aCUCGCUggcgCU-CUGGGGCccgguugCGCUGGCg -3'
miRNA:   3'- -GGGCGAa---GAuGGCCUCGaa-----GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 127331 0.72 0.536236
Target:  5'- gCCCGCggggGCCGGAGCggcggggCGCUGGg -3'
miRNA:   3'- -GGGCGaagaUGGCCUCGaa-----GCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 126786 0.69 0.746704
Target:  5'- aCCGCgucugcgUCUGCCGaGAGCa--GCgCGGCg -3'
miRNA:   3'- gGGCGa------AGAUGGC-CUCGaagCG-GCUG- -5'
23808 5' -56.8 NC_005261.1 + 125680 0.68 0.784281
Target:  5'- gCCGCcgaaugggUUUGCCGG-GCUUgGcCCGGCg -3'
miRNA:   3'- gGGCGa-------AGAUGGCCuCGAAgC-GGCUG- -5'
23808 5' -56.8 NC_005261.1 + 121210 0.68 0.760066
Target:  5'- gCCGCgg--GCCGGAGaCUgcagcaccgcauggCGCCGGCc -3'
miRNA:   3'- gGGCGaagaUGGCCUC-GAa-------------GCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.