miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23808 5' -56.8 NC_005261.1 + 74405 0.66 0.888881
Target:  5'- cCCCGUUUUcgGCCGcGGGCgggaggGCCGAg -3'
miRNA:   3'- -GGGCGAAGa-UGGC-CUCGaag---CGGCUg -5'
23808 5' -56.8 NC_005261.1 + 53032 0.66 0.888881
Target:  5'- uUCCGCggC-GCCGGGGCa--GCCGuCg -3'
miRNA:   3'- -GGGCGaaGaUGGCCUCGaagCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 97926 0.66 0.888881
Target:  5'- cCCCGCUg-UACUGGccgccAGCUcCGgCGGCa -3'
miRNA:   3'- -GGGCGAagAUGGCC-----UCGAaGCgGCUG- -5'
23808 5' -56.8 NC_005261.1 + 128560 0.66 0.888881
Target:  5'- aCUCGCUggcgCU-CUGGGGCccgguugCGCUGGCg -3'
miRNA:   3'- -GGGCGAa---GAuGGCCUCGaa-----GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 98699 0.66 0.888881
Target:  5'- -gCGCg---GCCGGAGCUgggGCCGGg -3'
miRNA:   3'- ggGCGaagaUGGCCUCGAag-CGGCUg -5'
23808 5' -56.8 NC_005261.1 + 59462 0.66 0.888881
Target:  5'- gCCGCggcgUCgg--GGGGCagCGCCGGCg -3'
miRNA:   3'- gGGCGa---AGauggCCUCGaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 73126 0.66 0.888881
Target:  5'- gUCCGCgcggUCcccggGCCGG-GCUcgCGCCGcCa -3'
miRNA:   3'- -GGGCGa---AGa----UGGCCuCGAa-GCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 31082 0.66 0.888205
Target:  5'- gCCCGCgugCUGggccccaugccgcCCGGcGGCcccgcCGCCGACg -3'
miRNA:   3'- -GGGCGaa-GAU-------------GGCC-UCGaa---GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 38680 0.66 0.888205
Target:  5'- gCCCGCcagUCUcgcgcugGCCGG-GCccaaGCCGGCc -3'
miRNA:   3'- -GGGCGa--AGA-------UGGCCuCGaag-CGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 117406 0.66 0.88202
Target:  5'- gCCCGaCUUUcgGCUGGAGCUggagucccccUCGggguuCCGGCg -3'
miRNA:   3'- -GGGC-GAAGa-UGGCCUCGA----------AGC-----GGCUG- -5'
23808 5' -56.8 NC_005261.1 + 95777 0.66 0.88202
Target:  5'- cCUCGCgcgCUgcGCCGGcgcGCUgcuagccggCGCCGGCg -3'
miRNA:   3'- -GGGCGaa-GA--UGGCCu--CGAa--------GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 134308 0.66 0.88202
Target:  5'- gCCGcCUUCgccgcGCUGGAGCUggucUCGCUG-Cu -3'
miRNA:   3'- gGGC-GAAGa----UGGCCUCGA----AGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 100908 0.66 0.88202
Target:  5'- gCCGCgcaCcGCCGcGAGCgUCGCCuGCa -3'
miRNA:   3'- gGGCGaa-GaUGGC-CUCGaAGCGGcUG- -5'
23808 5' -56.8 NC_005261.1 + 102962 0.66 0.88202
Target:  5'- gCCGCgggcGCCGcGGGCUcCGCCGcCg -3'
miRNA:   3'- gGGCGaagaUGGC-CUCGAaGCGGCuG- -5'
23808 5' -56.8 NC_005261.1 + 54871 0.66 0.87494
Target:  5'- aCCCGCacg-GCCGGAuGaugCGUCGGCg -3'
miRNA:   3'- -GGGCGaagaUGGCCU-CgaaGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 112150 0.66 0.87494
Target:  5'- gCCCGCgac-GCCGaucauGCUcuUCGCCGGCc -3'
miRNA:   3'- -GGGCGaagaUGGCcu---CGA--AGCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 93829 0.66 0.87494
Target:  5'- gCCGCagCcGCCGGgcGGCgcCGCCGAg -3'
miRNA:   3'- gGGCGaaGaUGGCC--UCGaaGCGGCUg -5'
23808 5' -56.8 NC_005261.1 + 38603 0.66 0.87494
Target:  5'- gCCCGCggCUggcggguguugGCCGcggccGAGCccgcCGCCGACg -3'
miRNA:   3'- -GGGCGaaGA-----------UGGC-----CUCGaa--GCGGCUG- -5'
23808 5' -56.8 NC_005261.1 + 14363 0.66 0.867645
Target:  5'- gCCGCg---GCCGGGGCggCGCggUGGCc -3'
miRNA:   3'- gGGCGaagaUGGCCUCGaaGCG--GCUG- -5'
23808 5' -56.8 NC_005261.1 + 135180 0.66 0.867645
Target:  5'- gCUCGCUgcggCUcGCgCGGAGCaUgGCCGAg -3'
miRNA:   3'- -GGGCGAa---GA-UG-GCCUCGaAgCGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.