miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 130049 0.66 0.812951
Target:  5'- -aCGCGGCcugguGCUUCGAGagGCACUCAAUg -3'
miRNA:   3'- cgGCGCUG-----CGGGGCUUg-CGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 94862 0.66 0.812951
Target:  5'- cGCuCGCGcACGgCCCGGGCGgGCggcccgcgugCAGCc -3'
miRNA:   3'- -CG-GCGC-UGCgGGGCUUGCgUGa---------GUUG- -5'
23814 3' -57.7 NC_005261.1 + 18352 0.66 0.812951
Target:  5'- aGCacgaGCGACGUCCCGcuaagcGCGUAgUCGGa -3'
miRNA:   3'- -CGg---CGCUGCGGGGCu-----UGCGUgAGUUg -5'
23814 3' -57.7 NC_005261.1 + 132731 0.66 0.812951
Target:  5'- aUUGCGGCGgCCC---CGCACUCAAg -3'
miRNA:   3'- cGGCGCUGCgGGGcuuGCGUGAGUUg -5'
23814 3' -57.7 NC_005261.1 + 4927 0.66 0.812951
Target:  5'- cGCCGCG--GCCgCGAGCGCccGCgccgCGGCc -3'
miRNA:   3'- -CGGCGCugCGGgGCUUGCG--UGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 127081 0.66 0.812951
Target:  5'- cGCCGCcGCGCCgCCGcAAUGacgGCUgGGCg -3'
miRNA:   3'- -CGGCGcUGCGG-GGC-UUGCg--UGAgUUG- -5'
23814 3' -57.7 NC_005261.1 + 1565 0.66 0.812951
Target:  5'- gGCCgcaGCGGCGCgCCGAGCccccaGCGgUUGGCg -3'
miRNA:   3'- -CGG---CGCUGCGgGGCUUG-----CGUgAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 106273 0.66 0.812951
Target:  5'- uGCCGCcgGGCGgCCCGugcaAACGCcgucgacCUCGGCg -3'
miRNA:   3'- -CGGCG--CUGCgGGGC----UUGCGu------GAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 67809 0.66 0.812951
Target:  5'- cGCCGCccaGugGCaaCUCGGGCGCGCgCAGg -3'
miRNA:   3'- -CGGCG---CugCG--GGGCUUGCGUGaGUUg -5'
23814 3' -57.7 NC_005261.1 + 5521 0.66 0.812951
Target:  5'- gGCgGCGAgGCCgCCGGcuucgGCGCGCagCGAg -3'
miRNA:   3'- -CGgCGCUgCGG-GGCU-----UGCGUGa-GUUg -5'
23814 3' -57.7 NC_005261.1 + 93607 0.66 0.812951
Target:  5'- cGCCGU--CGCCCCGGgucGCGaCGC-CGGCc -3'
miRNA:   3'- -CGGCGcuGCGGGGCU---UGC-GUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 72298 0.66 0.812951
Target:  5'- uUCGCGACGUgggCC--ACGCGCUCGAUg -3'
miRNA:   3'- cGGCGCUGCGg--GGcuUGCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 31942 0.66 0.809487
Target:  5'- uGCCGCGGCGCCaacgugcgcuacaCGGuggccACGCGcCUgGGCc -3'
miRNA:   3'- -CGGCGCUGCGGg------------GCU-----UGCGU-GAgUUG- -5'
23814 3' -57.7 NC_005261.1 + 103291 0.66 0.812951
Target:  5'- uGCCGCGcGCaGCCCCGcgaaGCcCUgCAGCg -3'
miRNA:   3'- -CGGCGC-UG-CGGGGCuug-CGuGA-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 82738 0.66 0.812951
Target:  5'- aGCCGCGccaGCCCgucugCGAucGCGCGgUCAAa -3'
miRNA:   3'- -CGGCGCug-CGGG-----GCU--UGCGUgAGUUg -5'
23814 3' -57.7 NC_005261.1 + 119133 0.66 0.812951
Target:  5'- gGCCGCGGCGCggccaucucggaUCCGccCGCGCgCGAg -3'
miRNA:   3'- -CGGCGCUGCG------------GGGCuuGCGUGaGUUg -5'
23814 3' -57.7 NC_005261.1 + 29945 0.66 0.812951
Target:  5'- cGCUGCGGCcuGCCgCGAG-GCGCUagaGGCg -3'
miRNA:   3'- -CGGCGCUG--CGGgGCUUgCGUGAg--UUG- -5'
23814 3' -57.7 NC_005261.1 + 2214 0.66 0.812951
Target:  5'- cGCCGCGAgcaggUGCgagagCCCGccGCGCAC-CGGCg -3'
miRNA:   3'- -CGGCGCU-----GCG-----GGGCu-UGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 28881 0.66 0.812951
Target:  5'- cGgCGCgGACGCCgCCGccUGCGCcCAACg -3'
miRNA:   3'- -CgGCG-CUGCGG-GGCuuGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 80104 0.66 0.812951
Target:  5'- cGCCGCGGuacCGgCuuGGGCGcCGCggCAGCg -3'
miRNA:   3'- -CGGCGCU---GCgGggCUUGC-GUGa-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.