Results 21 - 40 of 561 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23814 | 3' | -57.7 | NC_005261.1 | + | 71238 | 0.66 | 0.821496 |
Target: 5'- gGCCcucgGCGGCGCagCCGAGCcccGCGCcgagCAGCa -3' miRNA: 3'- -CGG----CGCUGCGg-GGCUUG---CGUGa---GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 103597 | 0.66 | 0.821496 |
Target: 5'- cGCCGcCGugGCCgCGGcgGCaGCGCgggaggCGGCg -3' miRNA: 3'- -CGGC-GCugCGGgGCU--UG-CGUGa-----GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 67809 | 0.66 | 0.812951 |
Target: 5'- cGCCGCccaGugGCaaCUCGGGCGCGCgCAGg -3' miRNA: 3'- -CGGCG---CugCG--GGGCUUGCGUGaGUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 77521 | 0.66 | 0.821496 |
Target: 5'- cGCCGCGccccCGCCCCcGAUGCcggGCUgguaCGGCg -3' miRNA: 3'- -CGGCGCu---GCGGGGcUUGCG---UGA----GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 103291 | 0.66 | 0.812951 |
Target: 5'- uGCCGCGcGCaGCCCCGcgaaGCcCUgCAGCg -3' miRNA: 3'- -CGGCGC-UG-CGGGGCuug-CGuGA-GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 94862 | 0.66 | 0.812951 |
Target: 5'- cGCuCGCGcACGgCCCGGGCGgGCggcccgcgugCAGCc -3' miRNA: 3'- -CG-GCGC-UGCgGGGCUUGCgUGa---------GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 20803 | 0.66 | 0.821496 |
Target: 5'- uGCCcCGACGCgCCUGGuuuacGCGCAgCUgAACu -3' miRNA: 3'- -CGGcGCUGCG-GGGCU-----UGCGU-GAgUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 38288 | 0.66 | 0.829044 |
Target: 5'- uGCaCGCGGUGCuggcccgCCUGAGCGCGCagGGCg -3' miRNA: 3'- -CG-GCGCUGCG-------GGGCUUGCGUGagUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 29945 | 0.66 | 0.812951 |
Target: 5'- cGCUGCGGCcuGCCgCGAG-GCGCUagaGGCg -3' miRNA: 3'- -CGGCGCUG--CGGgGCUUgCGUGAg--UUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 115926 | 0.66 | 0.820649 |
Target: 5'- cGCCGCGuccGCGCgcggggcaggguaCUCGuACGCGCcCAGCa -3' miRNA: 3'- -CGGCGC---UGCG-------------GGGCuUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 28881 | 0.66 | 0.812951 |
Target: 5'- cGgCGCgGACGCCgCCGccUGCGCcCAACg -3' miRNA: 3'- -CgGCG-CUGCGG-GGCuuGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 112910 | 0.66 | 0.812951 |
Target: 5'- uGCCGCGcuGCGUgCgCGAgggcgagggcgGCGCGCUCGc- -3' miRNA: 3'- -CGGCGC--UGCGgG-GCU-----------UGCGUGAGUug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 82738 | 0.66 | 0.812951 |
Target: 5'- aGCCGCGccaGCCCgucugCGAucGCGCGgUCAAa -3' miRNA: 3'- -CGGCGCug-CGGG-----GCU--UGCGUgAGUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 105287 | 0.66 | 0.853922 |
Target: 5'- cGCCgGCGA-G-CCCGGGCGCGCg-AGCg -3' miRNA: 3'- -CGG-CGCUgCgGGGCUUGCGUGagUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 47927 | 0.66 | 0.821496 |
Target: 5'- gGCCGUcACGUCCCGcgcgccGCGCGCg-AGCg -3' miRNA: 3'- -CGGCGcUGCGGGGCu-----UGCGUGagUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 96167 | 0.66 | 0.81895 |
Target: 5'- uGCCGCGcguGCCCauguuugcgacguaCGAccacGCGCACUgGGCg -3' miRNA: 3'- -CGGCGCug-CGGG--------------GCU----UGCGUGAgUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 118553 | 0.66 | 0.812951 |
Target: 5'- cGCgCGCGAggaCGCcgugCCCGcGCGCGCggCGGCg -3' miRNA: 3'- -CG-GCGCU---GCG----GGGCuUGCGUGa-GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 89316 | 0.66 | 0.816389 |
Target: 5'- cGUCGUccagaucucgugucuGACGUaCUCGcuGCGCACUCAGCg -3' miRNA: 3'- -CGGCG---------------CUGCG-GGGCu-UGCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 84284 | 0.66 | 0.821496 |
Target: 5'- uGCCGcCGGCgGCCCCGGccccgGCgGCGC-CGAa -3' miRNA: 3'- -CGGC-GCUG-CGGGGCU-----UG-CGUGaGUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 12301 | 0.66 | 0.820649 |
Target: 5'- cGCCGCGggcacggGCGCguagCCGGcgggcGCGCGCUUGGCc -3' miRNA: 3'- -CGGCGC-------UGCGg---GGCU-----UGCGUGAGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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