miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 71238 0.66 0.821496
Target:  5'- gGCCcucgGCGGCGCagCCGAGCcccGCGCcgagCAGCa -3'
miRNA:   3'- -CGG----CGCUGCGg-GGCUUG---CGUGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 103597 0.66 0.821496
Target:  5'- cGCCGcCGugGCCgCGGcgGCaGCGCgggaggCGGCg -3'
miRNA:   3'- -CGGC-GCugCGGgGCU--UG-CGUGa-----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 67809 0.66 0.812951
Target:  5'- cGCCGCccaGugGCaaCUCGGGCGCGCgCAGg -3'
miRNA:   3'- -CGGCG---CugCG--GGGCUUGCGUGaGUUg -5'
23814 3' -57.7 NC_005261.1 + 77521 0.66 0.821496
Target:  5'- cGCCGCGccccCGCCCCcGAUGCcggGCUgguaCGGCg -3'
miRNA:   3'- -CGGCGCu---GCGGGGcUUGCG---UGA----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 103291 0.66 0.812951
Target:  5'- uGCCGCGcGCaGCCCCGcgaaGCcCUgCAGCg -3'
miRNA:   3'- -CGGCGC-UG-CGGGGCuug-CGuGA-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 94862 0.66 0.812951
Target:  5'- cGCuCGCGcACGgCCCGGGCGgGCggcccgcgugCAGCc -3'
miRNA:   3'- -CG-GCGC-UGCgGGGCUUGCgUGa---------GUUG- -5'
23814 3' -57.7 NC_005261.1 + 20803 0.66 0.821496
Target:  5'- uGCCcCGACGCgCCUGGuuuacGCGCAgCUgAACu -3'
miRNA:   3'- -CGGcGCUGCG-GGGCU-----UGCGU-GAgUUG- -5'
23814 3' -57.7 NC_005261.1 + 38288 0.66 0.829044
Target:  5'- uGCaCGCGGUGCuggcccgCCUGAGCGCGCagGGCg -3'
miRNA:   3'- -CG-GCGCUGCG-------GGGCUUGCGUGagUUG- -5'
23814 3' -57.7 NC_005261.1 + 29945 0.66 0.812951
Target:  5'- cGCUGCGGCcuGCCgCGAG-GCGCUagaGGCg -3'
miRNA:   3'- -CGGCGCUG--CGGgGCUUgCGUGAg--UUG- -5'
23814 3' -57.7 NC_005261.1 + 115926 0.66 0.820649
Target:  5'- cGCCGCGuccGCGCgcggggcaggguaCUCGuACGCGCcCAGCa -3'
miRNA:   3'- -CGGCGC---UGCG-------------GGGCuUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 28881 0.66 0.812951
Target:  5'- cGgCGCgGACGCCgCCGccUGCGCcCAACg -3'
miRNA:   3'- -CgGCG-CUGCGG-GGCuuGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 112910 0.66 0.812951
Target:  5'- uGCCGCGcuGCGUgCgCGAgggcgagggcgGCGCGCUCGc- -3'
miRNA:   3'- -CGGCGC--UGCGgG-GCU-----------UGCGUGAGUug -5'
23814 3' -57.7 NC_005261.1 + 82738 0.66 0.812951
Target:  5'- aGCCGCGccaGCCCgucugCGAucGCGCGgUCAAa -3'
miRNA:   3'- -CGGCGCug-CGGG-----GCU--UGCGUgAGUUg -5'
23814 3' -57.7 NC_005261.1 + 105287 0.66 0.853922
Target:  5'- cGCCgGCGA-G-CCCGGGCGCGCg-AGCg -3'
miRNA:   3'- -CGG-CGCUgCgGGGCUUGCGUGagUUG- -5'
23814 3' -57.7 NC_005261.1 + 47927 0.66 0.821496
Target:  5'- gGCCGUcACGUCCCGcgcgccGCGCGCg-AGCg -3'
miRNA:   3'- -CGGCGcUGCGGGGCu-----UGCGUGagUUG- -5'
23814 3' -57.7 NC_005261.1 + 96167 0.66 0.81895
Target:  5'- uGCCGCGcguGCCCauguuugcgacguaCGAccacGCGCACUgGGCg -3'
miRNA:   3'- -CGGCGCug-CGGG--------------GCU----UGCGUGAgUUG- -5'
23814 3' -57.7 NC_005261.1 + 118553 0.66 0.812951
Target:  5'- cGCgCGCGAggaCGCcgugCCCGcGCGCGCggCGGCg -3'
miRNA:   3'- -CG-GCGCU---GCG----GGGCuUGCGUGa-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 89316 0.66 0.816389
Target:  5'- cGUCGUccagaucucgugucuGACGUaCUCGcuGCGCACUCAGCg -3'
miRNA:   3'- -CGGCG---------------CUGCG-GGGCu-UGCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 84284 0.66 0.821496
Target:  5'- uGCCGcCGGCgGCCCCGGccccgGCgGCGC-CGAa -3'
miRNA:   3'- -CGGC-GCUG-CGGGGCU-----UG-CGUGaGUUg -5'
23814 3' -57.7 NC_005261.1 + 12301 0.66 0.820649
Target:  5'- cGCCGCGggcacggGCGCguagCCGGcgggcGCGCGCUUGGCc -3'
miRNA:   3'- -CGGCGC-------UGCGg---GGCU-----UGCGUGAGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.