miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 3344 0.8 0.18709
Target:  5'- cGCCGCGGCGCCC--GGCGCGC-CGGCc -3'
miRNA:   3'- -CGGCGCUGCGGGgcUUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 3461 0.71 0.529913
Target:  5'- cGCCGCGccGCGCgUCGAGuacCGCGC-CAGCg -3'
miRNA:   3'- -CGGCGC--UGCGgGGCUU---GCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 3530 0.7 0.589477
Target:  5'- cGCgGCGGcCGCCUCG-GCGCGCagcgCGGCg -3'
miRNA:   3'- -CGgCGCU-GCGGGGCuUGCGUGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 3560 0.67 0.795386
Target:  5'- gGgCGCGGCGCCgcuaaggCGcGCGCGCUCcACc -3'
miRNA:   3'- -CgGCGCUGCGGg------GCuUGCGUGAGuUG- -5'
23814 3' -57.7 NC_005261.1 + 3602 0.68 0.720055
Target:  5'- gGCCGCGccaagcagcucaGCuGCCCgGAgcACGCGCUCcggguGCg -3'
miRNA:   3'- -CGGCGC------------UG-CGGGgCU--UGCGUGAGu----UG- -5'
23814 3' -57.7 NC_005261.1 + 3724 0.72 0.520184
Target:  5'- -aCGCGcCGCUgCCGGACGCGC-CGGCg -3'
miRNA:   3'- cgGCGCuGCGG-GGCUUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 3754 0.68 0.710214
Target:  5'- aCCGCGcCGCCUCuAGCGC-CUCGcgGCa -3'
miRNA:   3'- cGGCGCuGCGGGGcUUGCGuGAGU--UG- -5'
23814 3' -57.7 NC_005261.1 + 3827 0.68 0.700307
Target:  5'- uGCCGCGG-G-CCCGGGCGCugGCggCAGCg -3'
miRNA:   3'- -CGGCGCUgCgGGGCUUGCG--UGa-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 3863 0.67 0.776323
Target:  5'- cGCCGCG-CGgCCggCGAgcacggcGCGCAgCUCGGCg -3'
miRNA:   3'- -CGGCGCuGCgGG--GCU-------UGCGU-GAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 4128 0.7 0.639991
Target:  5'- gGCCcCGGCaGCCCUGcACGCGCcgcugCAGCa -3'
miRNA:   3'- -CGGcGCUG-CGGGGCuUGCGUGa----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 4294 0.69 0.680335
Target:  5'- gGCCGCGG-GCCCCGcggccgccgcguAGCGCGCg---- -3'
miRNA:   3'- -CGGCGCUgCGGGGC------------UUGCGUGaguug -5'
23814 3' -57.7 NC_005261.1 + 4371 0.69 0.690345
Target:  5'- uGUCGCccGCGCCgCCGAAgCGCACgCGGCc -3'
miRNA:   3'- -CGGCGc-UGCGG-GGCUU-GCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 4463 0.7 0.589477
Target:  5'- aGCgGCGGCGgCCCGu-CGCGCggcgccgCGGCg -3'
miRNA:   3'- -CGgCGCUGCgGGGCuuGCGUGa------GUUG- -5'
23814 3' -57.7 NC_005261.1 + 4513 0.67 0.767979
Target:  5'- aGUCGCG-CGCCCgcgCGGGCGC-CgCGGCg -3'
miRNA:   3'- -CGGCGCuGCGGG---GCUUGCGuGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 4927 0.66 0.812951
Target:  5'- cGCCGCG--GCCgCGAGCGCccGCgccgCGGCc -3'
miRNA:   3'- -CGGCGCugCGGgGCUUGCG--UGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 4969 0.69 0.650106
Target:  5'- gGCCGCGGCGUCCUcuggggcccgGAGgGCGC-CGAg -3'
miRNA:   3'- -CGGCGCUGCGGGG----------CUUgCGUGaGUUg -5'
23814 3' -57.7 NC_005261.1 + 5441 0.68 0.737578
Target:  5'- gGCCGCGGCGgcggcaacagcgcccCCCCGAgcagcccccgcuaucGCGCGCgccggggggUAGCu -3'
miRNA:   3'- -CGGCGCUGC---------------GGGGCU---------------UGCGUGa--------GUUG- -5'
23814 3' -57.7 NC_005261.1 + 5521 0.66 0.812951
Target:  5'- gGCgGCGAgGCCgCCGGcuucgGCGCGCagCGAg -3'
miRNA:   3'- -CGgCGCUgCGG-GGCU-----UGCGUGa-GUUg -5'
23814 3' -57.7 NC_005261.1 + 7902 0.7 0.589477
Target:  5'- cGgCGCGGCGCCaCCaGAugGCGcCUgAGCu -3'
miRNA:   3'- -CgGCGCUGCGG-GG-CUugCGU-GAgUUG- -5'
23814 3' -57.7 NC_005261.1 + 9539 0.68 0.700307
Target:  5'- cGCCGaCGACcCCCCGGAaGC-CUgCGACg -3'
miRNA:   3'- -CGGC-GCUGcGGGGCUUgCGuGA-GUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.