Results 21 - 40 of 561 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23814 | 3' | -57.7 | NC_005261.1 | + | 3344 | 0.8 | 0.18709 |
Target: 5'- cGCCGCGGCGCCC--GGCGCGC-CGGCc -3' miRNA: 3'- -CGGCGCUGCGGGgcUUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3461 | 0.71 | 0.529913 |
Target: 5'- cGCCGCGccGCGCgUCGAGuacCGCGC-CAGCg -3' miRNA: 3'- -CGGCGC--UGCGgGGCUU---GCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3530 | 0.7 | 0.589477 |
Target: 5'- cGCgGCGGcCGCCUCG-GCGCGCagcgCGGCg -3' miRNA: 3'- -CGgCGCU-GCGGGGCuUGCGUGa---GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3560 | 0.67 | 0.795386 |
Target: 5'- gGgCGCGGCGCCgcuaaggCGcGCGCGCUCcACc -3' miRNA: 3'- -CgGCGCUGCGGg------GCuUGCGUGAGuUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3602 | 0.68 | 0.720055 |
Target: 5'- gGCCGCGccaagcagcucaGCuGCCCgGAgcACGCGCUCcggguGCg -3' miRNA: 3'- -CGGCGC------------UG-CGGGgCU--UGCGUGAGu----UG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3724 | 0.72 | 0.520184 |
Target: 5'- -aCGCGcCGCUgCCGGACGCGC-CGGCg -3' miRNA: 3'- cgGCGCuGCGG-GGCUUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3754 | 0.68 | 0.710214 |
Target: 5'- aCCGCGcCGCCUCuAGCGC-CUCGcgGCa -3' miRNA: 3'- cGGCGCuGCGGGGcUUGCGuGAGU--UG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3827 | 0.68 | 0.700307 |
Target: 5'- uGCCGCGG-G-CCCGGGCGCugGCggCAGCg -3' miRNA: 3'- -CGGCGCUgCgGGGCUUGCG--UGa-GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3863 | 0.67 | 0.776323 |
Target: 5'- cGCCGCG-CGgCCggCGAgcacggcGCGCAgCUCGGCg -3' miRNA: 3'- -CGGCGCuGCgGG--GCU-------UGCGU-GAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 4128 | 0.7 | 0.639991 |
Target: 5'- gGCCcCGGCaGCCCUGcACGCGCcgcugCAGCa -3' miRNA: 3'- -CGGcGCUG-CGGGGCuUGCGUGa----GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 4294 | 0.69 | 0.680335 |
Target: 5'- gGCCGCGG-GCCCCGcggccgccgcguAGCGCGCg---- -3' miRNA: 3'- -CGGCGCUgCGGGGC------------UUGCGUGaguug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 4371 | 0.69 | 0.690345 |
Target: 5'- uGUCGCccGCGCCgCCGAAgCGCACgCGGCc -3' miRNA: 3'- -CGGCGc-UGCGG-GGCUU-GCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 4463 | 0.7 | 0.589477 |
Target: 5'- aGCgGCGGCGgCCCGu-CGCGCggcgccgCGGCg -3' miRNA: 3'- -CGgCGCUGCgGGGCuuGCGUGa------GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 4513 | 0.67 | 0.767979 |
Target: 5'- aGUCGCG-CGCCCgcgCGGGCGC-CgCGGCg -3' miRNA: 3'- -CGGCGCuGCGGG---GCUUGCGuGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 4927 | 0.66 | 0.812951 |
Target: 5'- cGCCGCG--GCCgCGAGCGCccGCgccgCGGCc -3' miRNA: 3'- -CGGCGCugCGGgGCUUGCG--UGa---GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 4969 | 0.69 | 0.650106 |
Target: 5'- gGCCGCGGCGUCCUcuggggcccgGAGgGCGC-CGAg -3' miRNA: 3'- -CGGCGCUGCGGGG----------CUUgCGUGaGUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 5441 | 0.68 | 0.737578 |
Target: 5'- gGCCGCGGCGgcggcaacagcgcccCCCCGAgcagcccccgcuaucGCGCGCgccggggggUAGCu -3' miRNA: 3'- -CGGCGCUGC---------------GGGGCU---------------UGCGUGa--------GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 5521 | 0.66 | 0.812951 |
Target: 5'- gGCgGCGAgGCCgCCGGcuucgGCGCGCagCGAg -3' miRNA: 3'- -CGgCGCUgCGG-GGCU-----UGCGUGa-GUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 7902 | 0.7 | 0.589477 |
Target: 5'- cGgCGCGGCGCCaCCaGAugGCGcCUgAGCu -3' miRNA: 3'- -CgGCGCUGCGG-GG-CUugCGU-GAgUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 9539 | 0.68 | 0.700307 |
Target: 5'- cGCCGaCGACcCCCCGGAaGC-CUgCGACg -3' miRNA: 3'- -CGGC-GCUGcGGGGCUUgCGuGA-GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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