miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 90060 0.77 0.256364
Target:  5'- aGCCaGCGGCGCCCCGcGgGCGCcgagggCAGCg -3'
miRNA:   3'- -CGG-CGCUGCGGGGCuUgCGUGa-----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 127492 0.77 0.275077
Target:  5'- cGCUgGCGGCuGCCugCCGGGCGUACUCGGCg -3'
miRNA:   3'- -CGG-CGCUG-CGG--GGCUUGCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 12988 0.77 0.277653
Target:  5'- gGCCGCGACGcCgauuaggcccgcgagCCCGAGCGCGCccccCAGCa -3'
miRNA:   3'- -CGGCGCUGC-G---------------GGGCUUGCGUGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 101640 0.77 0.281553
Target:  5'- gGCCGCGuCGCgCCGcacCGUGCUCAGCa -3'
miRNA:   3'- -CGGCGCuGCGgGGCuu-GCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 30968 0.76 0.294867
Target:  5'- cGCCGCGACGgCCCGccgcggcgcaAGCGCAagUCGGCc -3'
miRNA:   3'- -CGGCGCUGCgGGGC----------UUGCGUg-AGUUG- -5'
23814 3' -57.7 NC_005261.1 + 110326 0.76 0.294867
Target:  5'- aCCGCGcCGCCgCGGACGCGCUgcGCg -3'
miRNA:   3'- cGGCGCuGCGGgGCUUGCGUGAguUG- -5'
23814 3' -57.7 NC_005261.1 + 123016 0.76 0.294867
Target:  5'- gGCCGUGGCGUCCgCGAGCGUcggCAGCa -3'
miRNA:   3'- -CGGCGCUGCGGG-GCUUGCGugaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 67300 0.76 0.300328
Target:  5'- cGCCGCGcgcGCGCCgCCGucggccgccgcCGCGCUCAGCc -3'
miRNA:   3'- -CGGCGC---UGCGG-GGCuu---------GCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 88478 0.76 0.301705
Target:  5'- gGCCGUGcCGCgCCGGAgcgcgcCGCGCUCGACc -3'
miRNA:   3'- -CGGCGCuGCGgGGCUU------GCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 88355 0.76 0.3129
Target:  5'- cGCCGCGGCGUUcacaucggaacggCCGAGCGCGCgcccaagguguaccUCGACg -3'
miRNA:   3'- -CGGCGCUGCGG-------------GGCUUGCGUG--------------AGUUG- -5'
23814 3' -57.7 NC_005261.1 + 39545 0.76 0.315748
Target:  5'- gGCCGCca-GCCCCGcGCGCGCgCGGCg -3'
miRNA:   3'- -CGGCGcugCGGGGCuUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 118043 0.76 0.315748
Target:  5'- gGCCGCGACGCCCgCGcuGGCGgcCGCggCAGCg -3'
miRNA:   3'- -CGGCGCUGCGGG-GC--UUGC--GUGa-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 1874 0.76 0.315748
Target:  5'- cGCCGCGAgGCCagcaCGGcGCGCGC-CAGCg -3'
miRNA:   3'- -CGGCGCUgCGGg---GCU-UGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 30056 0.76 0.315748
Target:  5'- gGCCGCGgccuGCGCUCCaGACGCGCUagCGGCg -3'
miRNA:   3'- -CGGCGC----UGCGGGGcUUGCGUGA--GUUG- -5'
23814 3' -57.7 NC_005261.1 + 53589 0.76 0.322952
Target:  5'- gGCCgGCGGCGCCCC-AGCGgAC-CGACg -3'
miRNA:   3'- -CGG-CGCUGCGGGGcUUGCgUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 20314 0.75 0.330278
Target:  5'- aCgGCGACuggGCCCCGAgccGCGCACgagCGACg -3'
miRNA:   3'- cGgCGCUG---CGGGGCU---UGCGUGa--GUUG- -5'
23814 3' -57.7 NC_005261.1 + 136458 0.75 0.330278
Target:  5'- gGCaCGCGGCaGCCCCaGAcucGCGCGCgggCAGCa -3'
miRNA:   3'- -CG-GCGCUG-CGGGG-CU---UGCGUGa--GUUG- -5'
23814 3' -57.7 NC_005261.1 + 2116 0.75 0.330278
Target:  5'- aGCaCGCccuGCGCgCCGAGCGCGCUCAc- -3'
miRNA:   3'- -CG-GCGc--UGCGgGGCUUGCGUGAGUug -5'
23814 3' -57.7 NC_005261.1 + 85897 0.75 0.330278
Target:  5'- cCCGCGcacgaACGCCUCGGugGCcuGCUCGACc -3'
miRNA:   3'- cGGCGC-----UGCGGGGCUugCG--UGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 88143 0.75 0.330278
Target:  5'- cGCCGCGcggggGCGCCCCGGcCGCGCa---- -3'
miRNA:   3'- -CGGCGC-----UGCGGGGCUuGCGUGaguug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.