Results 21 - 40 of 561 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23814 | 3' | -57.7 | NC_005261.1 | + | 90060 | 0.77 | 0.256364 |
Target: 5'- aGCCaGCGGCGCCCCGcGgGCGCcgagggCAGCg -3' miRNA: 3'- -CGG-CGCUGCGGGGCuUgCGUGa-----GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 127492 | 0.77 | 0.275077 |
Target: 5'- cGCUgGCGGCuGCCugCCGGGCGUACUCGGCg -3' miRNA: 3'- -CGG-CGCUG-CGG--GGCUUGCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 12988 | 0.77 | 0.277653 |
Target: 5'- gGCCGCGACGcCgauuaggcccgcgagCCCGAGCGCGCccccCAGCa -3' miRNA: 3'- -CGGCGCUGC-G---------------GGGCUUGCGUGa---GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 101640 | 0.77 | 0.281553 |
Target: 5'- gGCCGCGuCGCgCCGcacCGUGCUCAGCa -3' miRNA: 3'- -CGGCGCuGCGgGGCuu-GCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 30968 | 0.76 | 0.294867 |
Target: 5'- cGCCGCGACGgCCCGccgcggcgcaAGCGCAagUCGGCc -3' miRNA: 3'- -CGGCGCUGCgGGGC----------UUGCGUg-AGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 110326 | 0.76 | 0.294867 |
Target: 5'- aCCGCGcCGCCgCGGACGCGCUgcGCg -3' miRNA: 3'- cGGCGCuGCGGgGCUUGCGUGAguUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 123016 | 0.76 | 0.294867 |
Target: 5'- gGCCGUGGCGUCCgCGAGCGUcggCAGCa -3' miRNA: 3'- -CGGCGCUGCGGG-GCUUGCGugaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 67300 | 0.76 | 0.300328 |
Target: 5'- cGCCGCGcgcGCGCCgCCGucggccgccgcCGCGCUCAGCc -3' miRNA: 3'- -CGGCGC---UGCGG-GGCuu---------GCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 88478 | 0.76 | 0.301705 |
Target: 5'- gGCCGUGcCGCgCCGGAgcgcgcCGCGCUCGACc -3' miRNA: 3'- -CGGCGCuGCGgGGCUU------GCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 88355 | 0.76 | 0.3129 |
Target: 5'- cGCCGCGGCGUUcacaucggaacggCCGAGCGCGCgcccaagguguaccUCGACg -3' miRNA: 3'- -CGGCGCUGCGG-------------GGCUUGCGUG--------------AGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 39545 | 0.76 | 0.315748 |
Target: 5'- gGCCGCca-GCCCCGcGCGCGCgCGGCg -3' miRNA: 3'- -CGGCGcugCGGGGCuUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 118043 | 0.76 | 0.315748 |
Target: 5'- gGCCGCGACGCCCgCGcuGGCGgcCGCggCAGCg -3' miRNA: 3'- -CGGCGCUGCGGG-GC--UUGC--GUGa-GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 1874 | 0.76 | 0.315748 |
Target: 5'- cGCCGCGAgGCCagcaCGGcGCGCGC-CAGCg -3' miRNA: 3'- -CGGCGCUgCGGg---GCU-UGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 30056 | 0.76 | 0.315748 |
Target: 5'- gGCCGCGgccuGCGCUCCaGACGCGCUagCGGCg -3' miRNA: 3'- -CGGCGC----UGCGGGGcUUGCGUGA--GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 53589 | 0.76 | 0.322952 |
Target: 5'- gGCCgGCGGCGCCCC-AGCGgAC-CGACg -3' miRNA: 3'- -CGG-CGCUGCGGGGcUUGCgUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 20314 | 0.75 | 0.330278 |
Target: 5'- aCgGCGACuggGCCCCGAgccGCGCACgagCGACg -3' miRNA: 3'- cGgCGCUG---CGGGGCU---UGCGUGa--GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 136458 | 0.75 | 0.330278 |
Target: 5'- gGCaCGCGGCaGCCCCaGAcucGCGCGCgggCAGCa -3' miRNA: 3'- -CG-GCGCUG-CGGGG-CU---UGCGUGa--GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 2116 | 0.75 | 0.330278 |
Target: 5'- aGCaCGCccuGCGCgCCGAGCGCGCUCAc- -3' miRNA: 3'- -CG-GCGc--UGCGgGGCUUGCGUGAGUug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 85897 | 0.75 | 0.330278 |
Target: 5'- cCCGCGcacgaACGCCUCGGugGCcuGCUCGACc -3' miRNA: 3'- cGGCGC-----UGCGGGGCUugCG--UGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 88143 | 0.75 | 0.330278 |
Target: 5'- cGCCGCGcggggGCGCCCCGGcCGCGCa---- -3' miRNA: 3'- -CGGCGC-----UGCGGGGCUuGCGUGaguug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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