miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 75068 0.66 0.846093
Target:  5'- aCCGCG-CGCgCCGGcGgGgGCUCGGCg -3'
miRNA:   3'- cGGCGCuGCGgGGCU-UgCgUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 14881 0.66 0.846093
Target:  5'- aUCGCGGCGCa--GAGCGCGagcagCAGCa -3'
miRNA:   3'- cGGCGCUGCGgggCUUGCGUga---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 31872 0.66 0.846093
Target:  5'- gGCC-CGGCGCCuUCGcGCGCGC-CGAg -3'
miRNA:   3'- -CGGcGCUGCGG-GGCuUGCGUGaGUUg -5'
23814 3' -57.7 NC_005261.1 + 48449 0.66 0.846093
Target:  5'- -gCGUGGCGCggCCG-GCGCGgUCAACg -3'
miRNA:   3'- cgGCGCUGCGg-GGCuUGCGUgAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 29424 0.66 0.846093
Target:  5'- gGCCGCGGgGCCCgCGGcCGUGUUCGu- -3'
miRNA:   3'- -CGGCGCUgCGGG-GCUuGCGUGAGUug -5'
23814 3' -57.7 NC_005261.1 + 33617 0.66 0.846093
Target:  5'- gGCgGCGGgGCCCgGGgGCGCGCcCcGCa -3'
miRNA:   3'- -CGgCGCUgCGGGgCU-UGCGUGaGuUG- -5'
23814 3' -57.7 NC_005261.1 + 55169 0.66 0.846093
Target:  5'- cGCCGcCGGCGgCUCGcggggcggaucGGCGCACggcgUAGCg -3'
miRNA:   3'- -CGGC-GCUGCgGGGC-----------UUGCGUGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 37635 0.66 0.846093
Target:  5'- cGCCuaGCGGCGCCCCcaa-GCcCUUGGCc -3'
miRNA:   3'- -CGG--CGCUGCGGGGcuugCGuGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 101879 0.66 0.846093
Target:  5'- cGCgCGCagGGCGCCcagCCGcGCGCGCUCc-- -3'
miRNA:   3'- -CG-GCG--CUGCGG---GGCuUGCGUGAGuug -5'
23814 3' -57.7 NC_005261.1 + 86684 0.66 0.846093
Target:  5'- aGCCcgGCGAggcgGCCCaCGuACGCGCcCAGCg -3'
miRNA:   3'- -CGG--CGCUg---CGGG-GCuUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 121392 0.66 0.846093
Target:  5'- gGCgGCGGCGCcugCCCGAGUGCGa-CGGCu -3'
miRNA:   3'- -CGgCGCUGCG---GGGCUUGCGUgaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 81597 0.66 0.846093
Target:  5'- cGCCGaccguaucCGGCGCCCgCG-GCGggUUCAGCa -3'
miRNA:   3'- -CGGC--------GCUGCGGG-GCuUGCguGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 98930 0.66 0.8453
Target:  5'- gGCUGCGgggggcagcGCGUCCucguaguCGAGCGUcagGCUCGGCa -3'
miRNA:   3'- -CGGCGC---------UGCGGG-------GCUUGCG---UGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 117262 0.66 0.843708
Target:  5'- cGCCGCG-CGCCUCGAggacggcgagccugGCGCcgagcccgccCUCGAg -3'
miRNA:   3'- -CGGCGCuGCGGGGCU--------------UGCGu---------GAGUUg -5'
23814 3' -57.7 NC_005261.1 + 38423 0.66 0.838075
Target:  5'- uGUCGCgGGCGCCCUucgucaccuGcACGCACUUuGCc -3'
miRNA:   3'- -CGGCG-CUGCGGGG---------CuUGCGUGAGuUG- -5'
23814 3' -57.7 NC_005261.1 + 58902 0.66 0.838075
Target:  5'- aGgCGCG-CGCCagCGcGCGCAC-CAGCg -3'
miRNA:   3'- -CgGCGCuGCGGg-GCuUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 58562 0.66 0.838075
Target:  5'- cGCCGuCGugGCCgCGAGCGgCGagcgCGAg -3'
miRNA:   3'- -CGGC-GCugCGGgGCUUGC-GUga--GUUg -5'
23814 3' -57.7 NC_005261.1 + 58730 0.66 0.838075
Target:  5'- cGCCGCcGCGCa--GAGCGCGCUg--- -3'
miRNA:   3'- -CGGCGcUGCGgggCUUGCGUGAguug -5'
23814 3' -57.7 NC_005261.1 + 59080 0.66 0.838075
Target:  5'- cGCgCGCGgguGCGCCgCGcccuCGCGCUCGcagGCg -3'
miRNA:   3'- -CG-GCGC---UGCGGgGCuu--GCGUGAGU---UG- -5'
23814 3' -57.7 NC_005261.1 + 70234 0.66 0.838075
Target:  5'- cGCCGCG-CGCaaaCUCGAccucgGCGCGCUUg-- -3'
miRNA:   3'- -CGGCGCuGCG---GGGCU-----UGCGUGAGuug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.