Results 1 - 20 of 561 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23814 | 3' | -57.7 | NC_005261.1 | + | 76029 | 0.83 | 0.11859 |
Target: 5'- cGCCGCgGGCGCCCCGcGCGCcaUCAGCg -3' miRNA: 3'- -CGGCG-CUGCGGGGCuUGCGugAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 118634 | 0.83 | 0.121689 |
Target: 5'- cGCCGCGGCggcgcucuggGCCCCGGgccGCGCGCUCGGg -3' miRNA: 3'- -CGGCGCUG----------CGGGGCU---UGCGUGAGUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 11219 | 0.82 | 0.128112 |
Target: 5'- cGCCGCGugGCCCCccgcGGGCGCGCUUc-- -3' miRNA: 3'- -CGGCGCugCGGGG----CUUGCGUGAGuug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 29195 | 0.81 | 0.157051 |
Target: 5'- cGCCGCGGCGCCCgcgCGGGCGCGC--GACu -3' miRNA: 3'- -CGGCGCUGCGGG---GCUUGCGUGagUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 84861 | 0.81 | 0.157051 |
Target: 5'- gGCCGCGugGCCaugaCCGAGCGCACgaggUGGCu -3' miRNA: 3'- -CGGCGCugCGG----GGCUUGCGUGa---GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 124938 | 0.8 | 0.165158 |
Target: 5'- cGCCGCGcgcgcugugccgGCGCCCUGGAgccCGCACUCAAa -3' miRNA: 3'- -CGGCGC------------UGCGGGGCUU---GCGUGAGUUg -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 15260 | 0.8 | 0.173207 |
Target: 5'- gGCCGCGAuCGCCCCGGcggcgccgccgggGCGCGCggucgCGGCc -3' miRNA: 3'- -CGGCGCU-GCGGGGCU-------------UGCGUGa----GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 80857 | 0.8 | 0.182508 |
Target: 5'- aGCCGCG-CaCCCCaGGCGCGCUCAGCc -3' miRNA: 3'- -CGGCGCuGcGGGGcUUGCGUGAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 3344 | 0.8 | 0.18709 |
Target: 5'- cGCCGCGGCGCCC--GGCGCGC-CGGCc -3' miRNA: 3'- -CGGCGCUGCGGGgcUUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 31307 | 0.79 | 0.191774 |
Target: 5'- cGCCGCGcgGgGCCCgCGGGCGCGCUCGc- -3' miRNA: 3'- -CGGCGC--UgCGGG-GCUUGCGUGAGUug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 75858 | 0.79 | 0.206445 |
Target: 5'- cGCCGaCGGCgGCCCCGAcggcgccguggGCGCGCgCAGCg -3' miRNA: 3'- -CGGC-GCUG-CGGGGCU-----------UGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 11946 | 0.79 | 0.216758 |
Target: 5'- cGCCGCGGCggcucGCCCgGcGCGCGCUcCAGCg -3' miRNA: 3'- -CGGCGCUG-----CGGGgCuUGCGUGA-GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 1802 | 0.78 | 0.222078 |
Target: 5'- aGCgGCGGCGCCCCGGgguagagccGCGCGuaagcggcCUCGGCg -3' miRNA: 3'- -CGgCGCUGCGGGGCU---------UGCGU--------GAGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 10518 | 0.78 | 0.222078 |
Target: 5'- cGCUGCGG-GCCCCGcGGCGCGCUCGc- -3' miRNA: 3'- -CGGCGCUgCGGGGC-UUGCGUGAGUug -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 70812 | 0.78 | 0.227508 |
Target: 5'- uCCGCGccgGCgGCCCCGGGCGCGC-CGGCg -3' miRNA: 3'- cGGCGC---UG-CGGGGCUUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 59144 | 0.78 | 0.233051 |
Target: 5'- gGCCgGCG-CGCCCCGGGCGCGCg--GCg -3' miRNA: 3'- -CGG-CGCuGCGGGGCUUGCGUGaguUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 100720 | 0.78 | 0.233051 |
Target: 5'- aGCCGCGGcCGCgCCGcGCGCGCgcgCGGCg -3' miRNA: 3'- -CGGCGCU-GCGgGGCuUGCGUGa--GUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 49088 | 0.78 | 0.233051 |
Target: 5'- cGCCGCGG-GCCCgcUGAGCGCGCgCAGCa -3' miRNA: 3'- -CGGCGCUgCGGG--GCUUGCGUGaGUUG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 132362 | 0.78 | 0.233051 |
Target: 5'- cGCCGCGGCGCgCUCGc-CGCGCUCGcgGCg -3' miRNA: 3'- -CGGCGCUGCG-GGGCuuGCGUGAGU--UG- -5' |
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23814 | 3' | -57.7 | NC_005261.1 | + | 130132 | 0.78 | 0.236998 |
Target: 5'- cGCCGCG-CGCCguccgCCGAGCGCACcacguccuccaccgUCAGCg -3' miRNA: 3'- -CGGCGCuGCGG-----GGCUUGCGUG--------------AGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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