miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 76029 0.83 0.11859
Target:  5'- cGCCGCgGGCGCCCCGcGCGCcaUCAGCg -3'
miRNA:   3'- -CGGCG-CUGCGGGGCuUGCGugAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 118634 0.83 0.121689
Target:  5'- cGCCGCGGCggcgcucuggGCCCCGGgccGCGCGCUCGGg -3'
miRNA:   3'- -CGGCGCUG----------CGGGGCU---UGCGUGAGUUg -5'
23814 3' -57.7 NC_005261.1 + 11219 0.82 0.128112
Target:  5'- cGCCGCGugGCCCCccgcGGGCGCGCUUc-- -3'
miRNA:   3'- -CGGCGCugCGGGG----CUUGCGUGAGuug -5'
23814 3' -57.7 NC_005261.1 + 29195 0.81 0.157051
Target:  5'- cGCCGCGGCGCCCgcgCGGGCGCGC--GACu -3'
miRNA:   3'- -CGGCGCUGCGGG---GCUUGCGUGagUUG- -5'
23814 3' -57.7 NC_005261.1 + 84861 0.81 0.157051
Target:  5'- gGCCGCGugGCCaugaCCGAGCGCACgaggUGGCu -3'
miRNA:   3'- -CGGCGCugCGG----GGCUUGCGUGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 124938 0.8 0.165158
Target:  5'- cGCCGCGcgcgcugugccgGCGCCCUGGAgccCGCACUCAAa -3'
miRNA:   3'- -CGGCGC------------UGCGGGGCUU---GCGUGAGUUg -5'
23814 3' -57.7 NC_005261.1 + 15260 0.8 0.173207
Target:  5'- gGCCGCGAuCGCCCCGGcggcgccgccgggGCGCGCggucgCGGCc -3'
miRNA:   3'- -CGGCGCU-GCGGGGCU-------------UGCGUGa----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 80857 0.8 0.182508
Target:  5'- aGCCGCG-CaCCCCaGGCGCGCUCAGCc -3'
miRNA:   3'- -CGGCGCuGcGGGGcUUGCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 3344 0.8 0.18709
Target:  5'- cGCCGCGGCGCCC--GGCGCGC-CGGCc -3'
miRNA:   3'- -CGGCGCUGCGGGgcUUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 31307 0.79 0.191774
Target:  5'- cGCCGCGcgGgGCCCgCGGGCGCGCUCGc- -3'
miRNA:   3'- -CGGCGC--UgCGGG-GCUUGCGUGAGUug -5'
23814 3' -57.7 NC_005261.1 + 75858 0.79 0.206445
Target:  5'- cGCCGaCGGCgGCCCCGAcggcgccguggGCGCGCgCAGCg -3'
miRNA:   3'- -CGGC-GCUG-CGGGGCU-----------UGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 11946 0.79 0.216758
Target:  5'- cGCCGCGGCggcucGCCCgGcGCGCGCUcCAGCg -3'
miRNA:   3'- -CGGCGCUG-----CGGGgCuUGCGUGA-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 1802 0.78 0.222078
Target:  5'- aGCgGCGGCGCCCCGGgguagagccGCGCGuaagcggcCUCGGCg -3'
miRNA:   3'- -CGgCGCUGCGGGGCU---------UGCGU--------GAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 10518 0.78 0.222078
Target:  5'- cGCUGCGG-GCCCCGcGGCGCGCUCGc- -3'
miRNA:   3'- -CGGCGCUgCGGGGC-UUGCGUGAGUug -5'
23814 3' -57.7 NC_005261.1 + 70812 0.78 0.227508
Target:  5'- uCCGCGccgGCgGCCCCGGGCGCGC-CGGCg -3'
miRNA:   3'- cGGCGC---UG-CGGGGCUUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 132362 0.78 0.233051
Target:  5'- cGCCGCGGCGCgCUCGc-CGCGCUCGcgGCg -3'
miRNA:   3'- -CGGCGCUGCG-GGGCuuGCGUGAGU--UG- -5'
23814 3' -57.7 NC_005261.1 + 49088 0.78 0.233051
Target:  5'- cGCCGCGG-GCCCgcUGAGCGCGCgCAGCa -3'
miRNA:   3'- -CGGCGCUgCGGG--GCUUGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 100720 0.78 0.233051
Target:  5'- aGCCGCGGcCGCgCCGcGCGCGCgcgCGGCg -3'
miRNA:   3'- -CGGCGCU-GCGgGGCuUGCGUGa--GUUG- -5'
23814 3' -57.7 NC_005261.1 + 59144 0.78 0.233051
Target:  5'- gGCCgGCG-CGCCCCGGGCGCGCg--GCg -3'
miRNA:   3'- -CGG-CGCuGCGGGGCUUGCGUGaguUG- -5'
23814 3' -57.7 NC_005261.1 + 130132 0.78 0.236998
Target:  5'- cGCCGCG-CGCCguccgCCGAGCGCACcacguccuccaccgUCAGCg -3'
miRNA:   3'- -CGGCGCuGCGG-----GGCUUGCGUG--------------AGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.