miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23814 3' -57.7 NC_005261.1 + 337 0.69 0.670286
Target:  5'- gGCUGCGGCGgCCCGcAGCccgGCGCggccCGGCg -3'
miRNA:   3'- -CGGCGCUGCgGGGC-UUG---CGUGa---GUUG- -5'
23814 3' -57.7 NC_005261.1 + 460 0.67 0.795386
Target:  5'- gGCCGCGACGgCCggcggGAugGCGCg---- -3'
miRNA:   3'- -CGGCGCUGCgGGg----CUugCGUGaguug -5'
23814 3' -57.7 NC_005261.1 + 1335 0.7 0.609641
Target:  5'- cGCCGCcGCGCCgCGccUGCAC-CAGCg -3'
miRNA:   3'- -CGGCGcUGCGGgGCuuGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 1448 0.73 0.454311
Target:  5'- aGCgGCGGCGCCUCG-GCGUGCggcucCAGCa -3'
miRNA:   3'- -CGgCGCUGCGGGGCuUGCGUGa----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 1501 0.68 0.739508
Target:  5'- cGCCGCGGCcggcaGCUcgUCGGGCGCcaGCUcCAGCg -3'
miRNA:   3'- -CGGCGCUG-----CGG--GGCUUGCG--UGA-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 1565 0.66 0.812951
Target:  5'- gGCCgcaGCGGCGCgCCGAGCccccaGCGgUUGGCg -3'
miRNA:   3'- -CGG---CGCUGCGgGGCUUG-----CGUgAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 1691 0.67 0.757651
Target:  5'- aGCCGCGgcagcacGCGCUgCCGGuacuCGCGCggCGGCa -3'
miRNA:   3'- -CGGCGC-------UGCGG-GGCUu---GCGUGa-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 1754 0.7 0.589477
Target:  5'- aGgCGCGugGCCaCCGuguAGCGCACgUUGGCg -3'
miRNA:   3'- -CgGCGCugCGG-GGC---UUGCGUG-AGUUG- -5'
23814 3' -57.7 NC_005261.1 + 1802 0.78 0.222078
Target:  5'- aGCgGCGGCGCCCCGGgguagagccGCGCGuaagcggcCUCGGCg -3'
miRNA:   3'- -CGgCGCUGCGGGGCU---------UGCGU--------GAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 1874 0.76 0.315748
Target:  5'- cGCCGCGAgGCCagcaCGGcGCGCGC-CAGCg -3'
miRNA:   3'- -CGGCGCUgCGGg---GCU-UGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 1924 0.68 0.749102
Target:  5'- cGCgGCGcacuGCGCCgCGGGCaGCACcgCGGCg -3'
miRNA:   3'- -CGgCGC----UGCGGgGCUUG-CGUGa-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 2038 0.69 0.657179
Target:  5'- cGCCGCcGCGCCgCGGccagccgcaggcagAgGUACUCGACc -3'
miRNA:   3'- -CGGCGcUGCGGgGCU--------------UgCGUGAGUUG- -5'
23814 3' -57.7 NC_005261.1 + 2116 0.75 0.330278
Target:  5'- aGCaCGCccuGCGCgCCGAGCGCGCUCAc- -3'
miRNA:   3'- -CG-GCGc--UGCGgGGCUUGCGUGAGUug -5'
23814 3' -57.7 NC_005261.1 + 2214 0.66 0.812951
Target:  5'- cGCCGCGAgcaggUGCgagagCCCGccGCGCAC-CGGCg -3'
miRNA:   3'- -CGGCGCU-----GCG-----GGGCu-UGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 2260 0.67 0.777245
Target:  5'- gGCCGcCGGCGCUcguccucgCCGGGCGgCGCcgcCAGCg -3'
miRNA:   3'- -CGGC-GCUGCGG--------GGCUUGC-GUGa--GUUG- -5'
23814 3' -57.7 NC_005261.1 + 2397 0.67 0.795386
Target:  5'- gGCgGCGagcGCGCCCgCGGGCcccGCGCggCGGCg -3'
miRNA:   3'- -CGgCGC---UGCGGG-GCUUG---CGUGa-GUUG- -5'
23814 3' -57.7 NC_005261.1 + 2550 0.67 0.770772
Target:  5'- cGCCGCGgcgcuggGCGCgggcgugugguacucCCCGGGCGgCACgCGGCg -3'
miRNA:   3'- -CGGCGC-------UGCG---------------GGGCUUGC-GUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 2613 0.67 0.786383
Target:  5'- gGCgGCGGgGCCgCCGGGCgGCAUggggccCAGCa -3'
miRNA:   3'- -CGgCGCUgCGG-GGCUUG-CGUGa-----GUUG- -5'
23814 3' -57.7 NC_005261.1 + 2671 0.67 0.786383
Target:  5'- cGCCGCGcUGgggaCCCGGcgGCGCGC-CGGCu -3'
miRNA:   3'- -CGGCGCuGCg---GGGCU--UGCGUGaGUUG- -5'
23814 3' -57.7 NC_005261.1 + 3304 0.67 0.804244
Target:  5'- cCCGCGGUGCCCCGGccCGCAugucCUCcACc -3'
miRNA:   3'- cGGCGCUGCGGGGCUu-GCGU----GAGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.