miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 28271 0.67 0.936822
Target:  5'- gGGCGCUGUugccGCCGcCGCGgcCGCGg -3'
miRNA:   3'- aCCGUGACGuc--UGGCuGUGUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 32441 0.67 0.936822
Target:  5'- cGGC-CUGgGcGCCGGCACAgucacccccggGCACGg -3'
miRNA:   3'- aCCGuGACgUcUGGCUGUGUa----------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 49472 0.67 0.936822
Target:  5'- gGGCGC-GCAGGCCG-CGCGgaaGCu -3'
miRNA:   3'- aCCGUGaCGUCUGGCuGUGUaugUGc -5'
23819 3' -53.3 NC_005261.1 + 71964 0.67 0.936822
Target:  5'- cGGCGCggggcGCGGagcGCgCGGCAgGUGCGCa -3'
miRNA:   3'- aCCGUGa----CGUC---UG-GCUGUgUAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 87116 0.67 0.936822
Target:  5'- cGGCGUUGUagaaGGGCCG-CGgGUACGCGa -3'
miRNA:   3'- aCCGUGACG----UCUGGCuGUgUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 44731 0.67 0.936822
Target:  5'- gGGCGCUGCAGcugggccCCGA-GC-UGCGCGc -3'
miRNA:   3'- aCCGUGACGUCu------GGCUgUGuAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 12328 0.67 0.931704
Target:  5'- gGGCGCgcGCuuGGCCGGCGCGgcCGCc -3'
miRNA:   3'- aCCGUGa-CGu-CUGGCUGUGUauGUGc -5'
23819 3' -53.3 NC_005261.1 + 33078 0.67 0.931704
Target:  5'- cGGCGCUgGCGGccGCCGcCACAUccccugcgucggGCACu -3'
miRNA:   3'- aCCGUGA-CGUC--UGGCuGUGUA------------UGUGc -5'
23819 3' -53.3 NC_005261.1 + 59130 0.67 0.931704
Target:  5'- cGGCcaccgACU-CAGGCCGGCGCGccccggGCGCGc -3'
miRNA:   3'- aCCG-----UGAcGUCUGGCUGUGUa-----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 110385 0.67 0.931704
Target:  5'- aUGGCGCUGCGG-CUGGacCGCuucUACGCc -3'
miRNA:   3'- -ACCGUGACGUCuGGCU--GUGu--AUGUGc -5'
23819 3' -53.3 NC_005261.1 + 44021 0.67 0.931704
Target:  5'- cGGCGCgGCGGGCgGcCGCc-GCGCGg -3'
miRNA:   3'- aCCGUGaCGUCUGgCuGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 59421 0.67 0.931178
Target:  5'- cGGCGCUgucgcgcggcccgGCAGgcGCCGGCAgCA-GCGCGg -3'
miRNA:   3'- aCCGUGA-------------CGUC--UGGCUGU-GUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 75112 0.67 0.931178
Target:  5'- cUGGUaccgcacGCUGCaAGACCGGCugAU-CGCc -3'
miRNA:   3'- -ACCG-------UGACG-UCUGGCUGugUAuGUGc -5'
23819 3' -53.3 NC_005261.1 + 127804 0.67 0.926333
Target:  5'- cGGCGCcgcggcgGCGGGCCGcucGCGCu--CGCGg -3'
miRNA:   3'- aCCGUGa------CGUCUGGC---UGUGuauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 27359 0.67 0.926333
Target:  5'- cGGCGC--CGGACCGGCGCGagGC-CGg -3'
miRNA:   3'- aCCGUGacGUCUGGCUGUGUa-UGuGC- -5'
23819 3' -53.3 NC_005261.1 + 10350 0.67 0.926333
Target:  5'- cGGCucgGCGuuugucacGGCCGACACGcGCGCGc -3'
miRNA:   3'- aCCGugaCGU--------CUGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 71856 0.67 0.926333
Target:  5'- cUGGCGCucgcgccgcuUGCGGuCCGcccGCGCGgGCACGa -3'
miRNA:   3'- -ACCGUG----------ACGUCuGGC---UGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 119625 0.67 0.925782
Target:  5'- cGuGCACUGCGGcgugGCCGACAacgccacCGgcgGCGCGc -3'
miRNA:   3'- aC-CGUGACGUC----UGGCUGU-------GUa--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 86234 0.67 0.92071
Target:  5'- cGGUGCcGCAG-CCGAUGCAgcgucgugUGCGCGc -3'
miRNA:   3'- aCCGUGaCGUCuGGCUGUGU--------AUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 91204 0.67 0.92071
Target:  5'- cGGCGCcgUGCuGGCCGAgGCccACGCc -3'
miRNA:   3'- aCCGUG--ACGuCUGGCUgUGuaUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.