miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23820 3' -55.9 NC_005261.1 + 135570 0.73 0.539148
Target:  5'- gCACCAaggacccCAUCGUGgccACGGCCGGcGCCg -3'
miRNA:   3'- -GUGGUa------GUGGCACa--UGCCGGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 134024 0.71 0.640917
Target:  5'- aCGCCGcCGCCGcGcucGCGGCCAuGGCCg -3'
miRNA:   3'- -GUGGUaGUGGCaCa--UGCCGGUcUCGG- -5'
23820 3' -55.9 NC_005261.1 + 133208 0.66 0.899913
Target:  5'- uCGCCGaCGCCGUcgaGgcCGaGCUGGGGCCc -3'
miRNA:   3'- -GUGGUaGUGGCA---CauGC-CGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 132792 0.68 0.807257
Target:  5'- gCGCCccuUCGCCGa----GGCCAuGAGCCg -3'
miRNA:   3'- -GUGGu--AGUGGCacaugCCGGU-CUCGG- -5'
23820 3' -55.9 NC_005261.1 + 132081 0.71 0.670634
Target:  5'- cCGCCGUCGCCGcUGccgcggaggGCGGCCgcgacgcgcucguGGAGCg -3'
miRNA:   3'- -GUGGUAGUGGC-ACa--------UGCCGG-------------UCUCGg -5'
23820 3' -55.9 NC_005261.1 + 131563 0.68 0.815166
Target:  5'- uCGCCGUCGCCcggcugccccccgcgACGGCCGaGGCCu -3'
miRNA:   3'- -GUGGUAGUGGcaca-----------UGCCGGUcUCGG- -5'
23820 3' -55.9 NC_005261.1 + 130475 0.69 0.751531
Target:  5'- gGCUcgCGgCGUGccucgGCGGCgAGGGCCc -3'
miRNA:   3'- gUGGuaGUgGCACa----UGCCGgUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 128291 0.71 0.671655
Target:  5'- aAgCAUCACC----ACGGUCAGGGCCg -3'
miRNA:   3'- gUgGUAGUGGcacaUGCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 126425 0.69 0.770628
Target:  5'- gCGCCGUCGCCacGUACauaugcgcaaaGGCCAGccgcGCCa -3'
miRNA:   3'- -GUGGUAGUGGcaCAUG-----------CCGGUCu---CGG- -5'
23820 3' -55.9 NC_005261.1 + 125784 0.74 0.452579
Target:  5'- gGCCAagGCCGcUGcgaacggggcUugGGCCGGGGCCg -3'
miRNA:   3'- gUGGUagUGGC-AC----------AugCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 125716 0.66 0.899913
Target:  5'- gGCCGcCGCgGgcu-CGGCUGGGGCCg -3'
miRNA:   3'- gUGGUaGUGgCacauGCCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 125151 0.68 0.789227
Target:  5'- uCGCCggCGCCGUGauUGgGGCCGcGGUCa -3'
miRNA:   3'- -GUGGuaGUGGCAC--AUgCCGGUcUCGG- -5'
23820 3' -55.9 NC_005261.1 + 123903 0.72 0.559203
Target:  5'- gGCCGcCGCUGUgggGUGCGGCCcGAGCa -3'
miRNA:   3'- gUGGUaGUGGCA---CAUGCCGGuCUCGg -5'
23820 3' -55.9 NC_005261.1 + 122258 0.66 0.912307
Target:  5'- gGCCAgCGCCGcc-GCcGUCAGGGCCg -3'
miRNA:   3'- gUGGUaGUGGCacaUGcCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 121959 0.68 0.824647
Target:  5'- aACCAgcUCGCCGUGccGCGcuCCAGcGCCg -3'
miRNA:   3'- gUGGU--AGUGGCACa-UGCc-GGUCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 121169 0.68 0.824647
Target:  5'- uGCCcgggCGCuCG-GUGCacggGGCCGGGGCCg -3'
miRNA:   3'- gUGGua--GUG-GCaCAUG----CCGGUCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 120596 0.7 0.712142
Target:  5'- gGCCGUCGCC---UGCGGCCucGGcGCCg -3'
miRNA:   3'- gUGGUAGUGGcacAUGCCGG--UCuCGG- -5'
23820 3' -55.9 NC_005261.1 + 120406 0.69 0.761137
Target:  5'- gCGgCGUCugCGcUGaGCGGCCuGGGCUg -3'
miRNA:   3'- -GUgGUAGugGC-ACaUGCCGGuCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 119058 0.66 0.906228
Target:  5'- cCGCgGcCGCgCGUGUGCuuucguGGCCcGGGCCa -3'
miRNA:   3'- -GUGgUaGUG-GCACAUG------CCGGuCUCGG- -5'
23820 3' -55.9 NC_005261.1 + 118980 0.66 0.906228
Target:  5'- aCGCCG-CGCUGUGcuucUGC-GUCGGGGCCu -3'
miRNA:   3'- -GUGGUaGUGGCAC----AUGcCGGUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.