miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 5' -62.6 NC_005261.1 + 84952 0.65 0.626291
Target:  5'- cCUCG-GCGGccgccgaggcgucGGGCGcGUCCGCGAuGCGc -3'
miRNA:   3'- -GAGCaCGCCc------------CCCGC-UAGGCGCU-CGU- -5'
23823 5' -62.6 NC_005261.1 + 60052 0.66 0.620397
Target:  5'- -aCGgcgGCGGcgaagagcGGcGGcCGGUCCGCGGGCu -3'
miRNA:   3'- gaGCa--CGCC--------CC-CC-GCUAGGCGCUCGu -5'
23823 5' -62.6 NC_005261.1 + 137752 0.66 0.620397
Target:  5'- aUCGgcgcGCGcGGGGGCGGggUGCgGGGCGc -3'
miRNA:   3'- gAGCa---CGC-CCCCCGCUagGCG-CUCGU- -5'
23823 5' -62.6 NC_005261.1 + 69 0.66 0.620397
Target:  5'- aUCGgcgcGCGcGGGGGCGGggUGCgGGGCGc -3'
miRNA:   3'- gAGCa---CGC-CCCCCGCUagGCG-CUCGU- -5'
23823 5' -62.6 NC_005261.1 + 125269 0.66 0.616468
Target:  5'- cCUCGUcCGGGGGcCGcuggaagucaggCCGCGGGCGc -3'
miRNA:   3'- -GAGCAcGCCCCCcGCua----------GGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 23176 0.66 0.610579
Target:  5'- -gCGcGCcGGGGGCGAca-GCGAGCGc -3'
miRNA:   3'- gaGCaCGcCCCCCGCUaggCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 69227 0.66 0.610579
Target:  5'- -cUGUGCGcgcuGGGGCGGUUCGcCGAgGCGc -3'
miRNA:   3'- gaGCACGCc---CCCCGCUAGGC-GCU-CGU- -5'
23823 5' -62.6 NC_005261.1 + 129657 0.66 0.610579
Target:  5'- -gCGgcgGCGGcaGGGGCGGgaCCGgGGGCGu -3'
miRNA:   3'- gaGCa--CGCC--CCCCGCUa-GGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 34933 0.66 0.610579
Target:  5'- ----cGCGGGGGGCGG-CCGgcgcgaccCGGGCc -3'
miRNA:   3'- gagcaCGCCCCCCGCUaGGC--------GCUCGu -5'
23823 5' -62.6 NC_005261.1 + 67069 0.66 0.604696
Target:  5'- -gCGcGCGGGggcucgcucGGGCGGUCCauggcgcgacgcgguGCGGGCGg -3'
miRNA:   3'- gaGCaCGCCC---------CCCGCUAGG---------------CGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 95812 0.66 0.600777
Target:  5'- -cCG-GCGGGGGcucGCGGUCCucgcggcgcuuGUGGGCGg -3'
miRNA:   3'- gaGCaCGCCCCC---CGCUAGG-----------CGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 127811 0.66 0.600777
Target:  5'- -gCG-GCGGcGGGccgcucgcgcucGCGG-CCGCGAGCAg -3'
miRNA:   3'- gaGCaCGCC-CCC------------CGCUaGGCGCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 97652 0.66 0.59002
Target:  5'- --gGUGCcgcaccuGGGGGGCcggcGUCCGCGGGg- -3'
miRNA:   3'- gagCACG-------CCCCCCGc---UAGGCGCUCgu -5'
23823 5' -62.6 NC_005261.1 + 46104 0.66 0.581244
Target:  5'- -aCG-GcCGGGGGccGUGGUCCGCGuccAGCAg -3'
miRNA:   3'- gaGCaC-GCCCCC--CGCUAGGCGC---UCGU- -5'
23823 5' -62.6 NC_005261.1 + 81364 0.66 0.581244
Target:  5'- ---uUGCGGGGGGCGccgggcucgCUGgGGGCGc -3'
miRNA:   3'- gagcACGCCCCCCGCua-------GGCgCUCGU- -5'
23823 5' -62.6 NC_005261.1 + 71962 0.66 0.581244
Target:  5'- gUCG-GCGcGGGGcGCGGagCGCGcGGCAg -3'
miRNA:   3'- gAGCaCGC-CCCC-CGCUagGCGC-UCGU- -5'
23823 5' -62.6 NC_005261.1 + 56113 0.66 0.571524
Target:  5'- -gCGaGCGGcGGGaGCGcgCCGCaGGGCGg -3'
miRNA:   3'- gaGCaCGCC-CCC-CGCuaGGCG-CUCGU- -5'
23823 5' -62.6 NC_005261.1 + 105271 0.66 0.571524
Target:  5'- gCUCG-GCGGGcGGCaGcgCCGgCGAGCc -3'
miRNA:   3'- -GAGCaCGCCCcCCG-CuaGGC-GCUCGu -5'
23823 5' -62.6 NC_005261.1 + 69763 0.67 0.561844
Target:  5'- ----cGCGGGGGGCGGcgCCGgggacUGAGCc -3'
miRNA:   3'- gagcaCGCCCCCCGCUa-GGC-----GCUCGu -5'
23823 5' -62.6 NC_005261.1 + 78614 0.67 0.561844
Target:  5'- aCUCGgcUGUGGucGGGGCGccagGUCCGcCGAGUu -3'
miRNA:   3'- -GAGC--ACGCC--CCCCGC----UAGGC-GCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.