miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23826 5' -60 NC_005261.1 + 33078 0.66 0.735793
Target:  5'- ---cGGCgCugGCGGccGCCGCCACauccccUGCg -3'
miRNA:   3'- aguaCCG-GugCGUC--CGGCGGUGc-----ACG- -5'
23826 5' -60 NC_005261.1 + 107400 0.66 0.735793
Target:  5'- ---cGGCCAgaGCccGGCCGCCAgG-GCc -3'
miRNA:   3'- aguaCCGGUg-CGu-CCGGCGGUgCaCG- -5'
23826 5' -60 NC_005261.1 + 112688 0.66 0.735793
Target:  5'- ---gGGCUggGCGUcgAGGCCguGCC-CGUGCa -3'
miRNA:   3'- aguaCCGG--UGCG--UCCGG--CGGuGCACG- -5'
23826 5' -60 NC_005261.1 + 31565 0.66 0.735793
Target:  5'- gCcgGGuCCugGaCGGGCgCGCCggACGUGa -3'
miRNA:   3'- aGuaCC-GGugC-GUCCG-GCGG--UGCACg -5'
23826 5' -60 NC_005261.1 + 76978 0.66 0.735793
Target:  5'- -uGUGGCCcccuucCGCcGGCucuCGCCGCGcGCg -3'
miRNA:   3'- agUACCGGu-----GCGuCCG---GCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 54890 0.66 0.735793
Target:  5'- gCGUcGGCgCGCGCGuGCCGCaGCGcGCg -3'
miRNA:   3'- aGUA-CCG-GUGCGUcCGGCGgUGCaCG- -5'
23826 5' -60 NC_005261.1 + 96619 0.66 0.735793
Target:  5'- gCGUGG-CGCGCA-GCCGCCGg--GCg -3'
miRNA:   3'- aGUACCgGUGCGUcCGGCGGUgcaCG- -5'
23826 5' -60 NC_005261.1 + 78077 0.66 0.735793
Target:  5'- ---cGGCCcagGCGCuGGCCcCCGCGccgGCc -3'
miRNA:   3'- aguaCCGG---UGCGuCCGGcGGUGCa--CG- -5'
23826 5' -60 NC_005261.1 + 72696 0.66 0.735793
Target:  5'- ---cGGCgCGC-CAGGuCCGCCAgCGUcGCg -3'
miRNA:   3'- aguaCCG-GUGcGUCC-GGCGGU-GCA-CG- -5'
23826 5' -60 NC_005261.1 + 51869 0.66 0.735793
Target:  5'- ---cGGCCACGUgAGcGCCG-CGCG-GCa -3'
miRNA:   3'- aguaCCGGUGCG-UC-CGGCgGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 2772 0.66 0.734831
Target:  5'- cUCGaGGCC-CGCccccgagGGGCUGCCGcCG-GCg -3'
miRNA:   3'- -AGUaCCGGuGCG-------UCCGGCGGU-GCaCG- -5'
23826 5' -60 NC_005261.1 + 31867 0.66 0.732904
Target:  5'- cUUcgGGCCcgGCGCcuucgcgcgcgccgAGGCCGCuUACGcGCg -3'
miRNA:   3'- -AGuaCCGG--UGCG--------------UCCGGCG-GUGCaCG- -5'
23826 5' -60 NC_005261.1 + 132036 0.66 0.730008
Target:  5'- aCGUGGCCGCccuggaccccggggaGguGGCgGCCGagGUcGCg -3'
miRNA:   3'- aGUACCGGUG---------------CguCCGgCGGUg-CA-CG- -5'
23826 5' -60 NC_005261.1 + 127602 0.66 0.727105
Target:  5'- uUCggGGCCGCGCugaacgcuagcggccGGCCGgaCGCGacgGCg -3'
miRNA:   3'- -AGuaCCGGUGCGu--------------CCGGCg-GUGCa--CG- -5'
23826 5' -60 NC_005261.1 + 83924 0.66 0.726135
Target:  5'- aCggGGUCcgaGCGCGcGGCCGCCAuCGcUGUc -3'
miRNA:   3'- aGuaCCGG---UGCGU-CCGGCGGU-GC-ACG- -5'
23826 5' -60 NC_005261.1 + 47920 0.66 0.726135
Target:  5'- -----aCCGCGC-GGCCGUCACGUcccGCg -3'
miRNA:   3'- aguaccGGUGCGuCCGGCGGUGCA---CG- -5'
23826 5' -60 NC_005261.1 + 101895 0.66 0.726135
Target:  5'- ----aGCCGCGCGcGCUccuccucgaaaGCCGCGUGCc -3'
miRNA:   3'- aguacCGGUGCGUcCGG-----------CGGUGCACG- -5'
23826 5' -60 NC_005261.1 + 49527 0.66 0.726135
Target:  5'- gUCGcgGGCCAgccgccgucCGC-GGCCaCCACGUGg -3'
miRNA:   3'- -AGUa-CCGGU---------GCGuCCGGcGGUGCACg -5'
23826 5' -60 NC_005261.1 + 108232 0.66 0.726135
Target:  5'- gCAUGGCgCACGUgcccGGCgugaacccCGCCGCG-GCc -3'
miRNA:   3'- aGUACCG-GUGCGu---CCG--------GCGGUGCaCG- -5'
23826 5' -60 NC_005261.1 + 98200 0.66 0.726135
Target:  5'- gCGgcgGGCa--GCGGgcGCCGCCACG-GCa -3'
miRNA:   3'- aGUa--CCGgugCGUC--CGGCGGUGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.