miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23832 3' -50.4 NC_005261.1 + 60009 0.66 0.996553
Target:  5'- cGCGACggGCaGGGAC-ACGAAG-AGCc -3'
miRNA:   3'- cUGCUGa-UGcUCCUGcUGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 128112 0.66 0.996553
Target:  5'- cGCGGC-GCGGGGuCGggccgaguGCGGAGAgaGGCg -3'
miRNA:   3'- cUGCUGaUGCUCCuGC--------UGCUUCU--UCG- -5'
23832 3' -50.4 NC_005261.1 + 12409 0.66 0.996553
Target:  5'- cACGACggaGCccuccaGGGGCGGCGGAG-GGCu -3'
miRNA:   3'- cUGCUGa--UGc-----UCCUGCUGCUUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 30783 0.66 0.996553
Target:  5'- -cCGGCcGCGGcGGugGAggugcuggggcCGGAGGAGCu -3'
miRNA:   3'- cuGCUGaUGCU-CCugCU-----------GCUUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 75940 0.66 0.996553
Target:  5'- cGCGugUACGAGGccugcccCGAgGuGGAGGUc -3'
miRNA:   3'- cUGCugAUGCUCCu------GCUgCuUCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 90077 0.66 0.996553
Target:  5'- --gGGCgcCGAGGGCaGCGAcGGggGCc -3'
miRNA:   3'- cugCUGauGCUCCUGcUGCU-UCuuCG- -5'
23832 3' -50.4 NC_005261.1 + 101690 0.66 0.996553
Target:  5'- cGGCGAa---GcGGGCGugGucGAAGCg -3'
miRNA:   3'- -CUGCUgaugCuCCUGCugCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 56637 0.66 0.996553
Target:  5'- aGCGACcagACGcGGGGCG-CGcuGGAGCu -3'
miRNA:   3'- cUGCUGa--UGC-UCCUGCuGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 114291 0.66 0.995952
Target:  5'- --gGGCUACGuGGAgGACGccuuGAGCg -3'
miRNA:   3'- cugCUGAUGCuCCUgCUGCuuc-UUCG- -5'
23832 3' -50.4 NC_005261.1 + 60320 0.66 0.995952
Target:  5'- aGACGAUcAgGuGGACGACGGuguuuGcGGCg -3'
miRNA:   3'- -CUGCUGaUgCuCCUGCUGCUu----CuUCG- -5'
23832 3' -50.4 NC_005261.1 + 28010 0.66 0.995952
Target:  5'- cGCGAaa--GGGGGcCGGCGggGAGGa -3'
miRNA:   3'- cUGCUgaugCUCCU-GCUGCuuCUUCg -5'
23832 3' -50.4 NC_005261.1 + 81348 0.66 0.995952
Target:  5'- -uCGGCgggGCGGGGGCuuGCGggG-GGCg -3'
miRNA:   3'- cuGCUGa--UGCUCCUGc-UGCuuCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 75616 0.66 0.995952
Target:  5'- gGACGGCgucgcgUACGuGGACGACGuccaccGCg -3'
miRNA:   3'- -CUGCUG------AUGCuCCUGCUGCuucuu-CG- -5'
23832 3' -50.4 NC_005261.1 + 75873 0.66 0.995952
Target:  5'- cGACGGCgcCGuGGGCGcGCGcAGcGGCg -3'
miRNA:   3'- -CUGCUGauGCuCCUGC-UGCuUCuUCG- -5'
23832 3' -50.4 NC_005261.1 + 5402 0.66 0.995952
Target:  5'- aGCGAgaGCGcGGGCGccgcgaACGAAGGAGa -3'
miRNA:   3'- cUGCUgaUGCuCCUGC------UGCUUCUUCg -5'
23832 3' -50.4 NC_005261.1 + 89607 0.66 0.995269
Target:  5'- cGACGGCUACGGGaagcugaaccgcGGCGGCGucuuccGCg -3'
miRNA:   3'- -CUGCUGAUGCUC------------CUGCUGCuucuu-CG- -5'
23832 3' -50.4 NC_005261.1 + 39254 0.66 0.995269
Target:  5'- cGGCGAgguCUccaGCGAGGuCuuCGggGAGGCc -3'
miRNA:   3'- -CUGCU---GA---UGCUCCuGcuGCuuCUUCG- -5'
23832 3' -50.4 NC_005261.1 + 73491 0.66 0.994494
Target:  5'- cGCGGC-GCGcGGACGcgGCGAGGAucccacuuaaGGCg -3'
miRNA:   3'- cUGCUGaUGCuCCUGC--UGCUUCU----------UCG- -5'
23832 3' -50.4 NC_005261.1 + 69756 0.66 0.994494
Target:  5'- aGGCGAgcGCgGGGGGCGGCGccGggGa -3'
miRNA:   3'- -CUGCUgaUG-CUCCUGCUGCuuCuuCg -5'
23832 3' -50.4 NC_005261.1 + 70962 0.66 0.994494
Target:  5'- -cCGACgcCGc-GACGGCGAAGAagAGCg -3'
miRNA:   3'- cuGCUGauGCucCUGCUGCUUCU--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.