miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23834 3' -50.7 NC_005261.1 + 19933 0.66 0.995955
Target:  5'- gCCCucgcuaGCGUccUGGGCGggGGu----GGGGc -3'
miRNA:   3'- -GGG------CGCA--ACCCGCuuUUuucuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 136182 0.66 0.995955
Target:  5'- --aGCGaggaaaaggGGGCGAG--GAGAAGGGa -3'
miRNA:   3'- gggCGCaa-------CCCGCUUuuUUCUUCCCc -5'
23834 3' -50.7 NC_005261.1 + 6411 0.66 0.995955
Target:  5'- gCgCGCGUUGGcccggccugcucGCGAGGGcGGuccGGGGGc -3'
miRNA:   3'- -GgGCGCAACC------------CGCUUUUuUCu--UCCCC- -5'
23834 3' -50.7 NC_005261.1 + 28100 0.66 0.995955
Target:  5'- gCCGCagcaaagGGGUu--AGAGGggGGGGc -3'
miRNA:   3'- gGGCGcaa----CCCGcuuUUUUCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 57145 0.66 0.995955
Target:  5'- aUCGUGUuuauuggcaUGGGgGGAAAugGAGAGGaGGGn -3'
miRNA:   3'- gGGCGCA---------ACCCgCUUUU--UUCUUC-CCC- -5'
23834 3' -50.7 NC_005261.1 + 73824 0.66 0.995891
Target:  5'- gCCCGCGccuagcccggcucUUGGGCGAGucggcgccccGGAGGcuuuuAAGcGGGu -3'
miRNA:   3'- -GGGCGC-------------AACCCGCUU----------UUUUC-----UUC-CCC- -5'
23834 3' -50.7 NC_005261.1 + 69294 0.66 0.995826
Target:  5'- cCCCgGCGcgGGGCGccgguggcggcGGGAGcGGGGGu -3'
miRNA:   3'- -GGG-CGCaaCCCGCuu---------UUUUCuUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 119704 0.66 0.995276
Target:  5'- uCCaCGCGc--GGCGAu--GAGGAGGGc -3'
miRNA:   3'- -GG-GCGCaacCCGCUuuuUUCUUCCCc -5'
23834 3' -50.7 NC_005261.1 + 119273 0.66 0.995203
Target:  5'- uCCUGCucgcUGGGCGggGgcucgccGAGGAAGcGGa -3'
miRNA:   3'- -GGGCGca--ACCCGCuuU-------UUUCUUC-CCc -5'
23834 3' -50.7 NC_005261.1 + 134363 0.66 0.995203
Target:  5'- gCCgCGCGggGGGCGGcgccgcuggcgacGGcGAGAGcGGGa -3'
miRNA:   3'- -GG-GCGCaaCCCGCU-------------UUuUUCUUcCCC- -5'
23834 3' -50.7 NC_005261.1 + 13086 0.66 0.994506
Target:  5'- gCCCGuCGgcGGGCGGcgGGcucGGcucGGGGGc -3'
miRNA:   3'- -GGGC-GCaaCCCGCUuuUU---UCu--UCCCC- -5'
23834 3' -50.7 NC_005261.1 + 56107 0.66 0.993638
Target:  5'- uCCUGCGcgaGcGGCGGGAGcgcgccgcAGGgcGGGGg -3'
miRNA:   3'- -GGGCGCaa-C-CCGCUUUU--------UUCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 15026 0.66 0.992664
Target:  5'- gUCgGCGggugccggGGGCGuagc-GGggGGGGu -3'
miRNA:   3'- -GGgCGCaa------CCCGCuuuuuUCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 120928 0.67 0.991573
Target:  5'- aUCCGCGagcgccGGGCGc---GGGAAGGuGGa -3'
miRNA:   3'- -GGGCGCaa----CCCGCuuuuUUCUUCC-CC- -5'
23834 3' -50.7 NC_005261.1 + 48018 0.67 0.991573
Target:  5'- cCCCGcCGgcagagcaGGGCGAGGAGcacgcgcgcgcGGucGGGGc -3'
miRNA:   3'- -GGGC-GCaa------CCCGCUUUUU-----------UCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 16178 0.67 0.991573
Target:  5'- -gCGCGggcGuGGCGggGGuGGgcGGGGg -3'
miRNA:   3'- ggGCGCaa-C-CCGCuuUUuUCuuCCCC- -5'
23834 3' -50.7 NC_005261.1 + 74343 0.67 0.990359
Target:  5'- aCCGCaGgcGcGGCGGc---GGAAGGGGc -3'
miRNA:   3'- gGGCG-CaaC-CCGCUuuuuUCUUCCCC- -5'
23834 3' -50.7 NC_005261.1 + 7106 0.67 0.989969
Target:  5'- aCUCGCGgu-GGCGcucucuuaacagccAGAGGAGAAGGaGGa -3'
miRNA:   3'- -GGGCGCaacCCGC--------------UUUUUUCUUCC-CC- -5'
23834 3' -50.7 NC_005261.1 + 36913 0.67 0.989837
Target:  5'- cCCCGCGcUGGGCcGGGAcguacuccGGGGc -3'
miRNA:   3'- -GGGCGCaACCCG-CUUUuuucuu--CCCC- -5'
23834 3' -50.7 NC_005261.1 + 5840 0.67 0.989012
Target:  5'- gCCGgGUUacGGCGGccGAGAGAGGGGu -3'
miRNA:   3'- gGGCgCAAc-CCGCUu-UUUUCUUCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.