miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23838 5' -58 NC_005261.1 + 84300 0.66 0.807257
Target:  5'- gGCCCcGG-CgGCGCCGaagGCGUaGGUCGc -3'
miRNA:   3'- -UGGGaCCuGgUGCGGU---UGCA-CCAGUu -5'
23838 5' -58 NC_005261.1 + 59480 0.66 0.807257
Target:  5'- aGCgCCggcgcGGccGCCGCGCCAGCGgcggcGGUCGc -3'
miRNA:   3'- -UG-GGa----CC--UGGUGCGGUUGCa----CCAGUu -5'
23838 5' -58 NC_005261.1 + 76011 0.66 0.80637
Target:  5'- cGCCCUGGcgccgcgcagcGCCgcgggcgccccgcGCGCCAucaGCGUGGcCGg -3'
miRNA:   3'- -UGGGACC-----------UGG-------------UGCGGU---UGCACCaGUu -5'
23838 5' -58 NC_005261.1 + 31630 0.66 0.798318
Target:  5'- gACgCgGGACCugGCCuuccgcGGCGcGGUCGAg -3'
miRNA:   3'- -UGgGaCCUGGugCGG------UUGCaCCAGUU- -5'
23838 5' -58 NC_005261.1 + 40487 0.66 0.798318
Target:  5'- gGCCCUGGGa---GCgGGCGaUGGUCAu -3'
miRNA:   3'- -UGGGACCUggugCGgUUGC-ACCAGUu -5'
23838 5' -58 NC_005261.1 + 46113 0.66 0.789227
Target:  5'- gGCCgUGGuCCGCGuCCAGCa-GGUCGc -3'
miRNA:   3'- -UGGgACCuGGUGC-GGUUGcaCCAGUu -5'
23838 5' -58 NC_005261.1 + 118625 0.66 0.779995
Target:  5'- uGCCCUGGccGCCGCGgCGGCGcucUGGg--- -3'
miRNA:   3'- -UGGGACC--UGGUGCgGUUGC---ACCaguu -5'
23838 5' -58 NC_005261.1 + 58548 0.66 0.779995
Target:  5'- cGCCC-GGGCUccuGCGCCGuCGUGGcCGc -3'
miRNA:   3'- -UGGGaCCUGG---UGCGGUuGCACCaGUu -5'
23838 5' -58 NC_005261.1 + 73477 0.66 0.779995
Target:  5'- cCCCUGGGCCgcggcgcggcGCGCgGACGcGG-CGAg -3'
miRNA:   3'- uGGGACCUGG----------UGCGgUUGCaCCaGUU- -5'
23838 5' -58 NC_005261.1 + 104828 0.66 0.779995
Target:  5'- gGCgUCgcgGGGCCGCGCCAcgcggaccGCGcgGGUCAc -3'
miRNA:   3'- -UG-GGa--CCUGGUGCGGU--------UGCa-CCAGUu -5'
23838 5' -58 NC_005261.1 + 26655 0.66 0.770628
Target:  5'- cCCCUGGGCCacACGCCcgGACGcggagGGUaCAc -3'
miRNA:   3'- uGGGACCUGG--UGCGG--UUGCa----CCA-GUu -5'
23838 5' -58 NC_005261.1 + 106685 0.66 0.770628
Target:  5'- cGCCCgaGGGCCGCGCCGAUcgcGUCc- -3'
miRNA:   3'- -UGGGa-CCUGGUGCGGUUGcacCAGuu -5'
23838 5' -58 NC_005261.1 + 31929 0.66 0.770628
Target:  5'- cGCCgCUGGGCUcugccgcgGCGCCAACGUGc---- -3'
miRNA:   3'- -UGG-GACCUGG--------UGCGGUUGCACcaguu -5'
23838 5' -58 NC_005261.1 + 132948 0.66 0.770628
Target:  5'- cCCCgagcGCUGCGCCGACGUGGcCGc -3'
miRNA:   3'- uGGGacc-UGGUGCGGUUGCACCaGUu -5'
23838 5' -58 NC_005261.1 + 111794 0.66 0.761137
Target:  5'- cCCCUGGacGCCugGCUcGCGUcGGcCGAg -3'
miRNA:   3'- uGGGACC--UGGugCGGuUGCA-CCaGUU- -5'
23838 5' -58 NC_005261.1 + 78182 0.67 0.74182
Target:  5'- aGCCCgGGGCCAuUGCCAcUGUGGaCGc -3'
miRNA:   3'- -UGGGaCCUGGU-GCGGUuGCACCaGUu -5'
23838 5' -58 NC_005261.1 + 90409 0.67 0.732011
Target:  5'- cGCCCggcgcGGACUACGCgacguuCGACGUGGgCGGg -3'
miRNA:   3'- -UGGGa----CCUGGUGCG------GUUGCACCaGUU- -5'
23838 5' -58 NC_005261.1 + 50942 0.67 0.732011
Target:  5'- cCCCUGcuuCUACGCgGcCGUGGUCGAc -3'
miRNA:   3'- uGGGACcu-GGUGCGgUuGCACCAGUU- -5'
23838 5' -58 NC_005261.1 + 27294 0.67 0.702101
Target:  5'- cGCCCUcgcgagcaGGCCGgGCCAACGcgcgcgGGUCAAg -3'
miRNA:   3'- -UGGGAc-------CUGGUgCGGUUGCa-----CCAGUU- -5'
23838 5' -58 NC_005261.1 + 77635 0.68 0.691999
Target:  5'- gGCCCUGGccggcGCCAuCGCCGACGgccGG-CGc -3'
miRNA:   3'- -UGGGACC-----UGGU-GCGGUUGCa--CCaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.