Results 1 - 20 of 380 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23839 | 3' | -59.2 | NC_005261.1 | + | 79820 | 0.66 | 0.784192 |
Target: 5'- aUGCGCGCgGCGGCgcggcgGCCaGCGCa-GCGc -3' miRNA: 3'- -ACGCGCGaUGCUGa-----CGG-CGUGccUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 38521 | 0.77 | 0.207642 |
Target: 5'- gGCGCGCgcUGGCUGCgCGCGcCGGGCa -3' miRNA: 3'- aCGCGCGauGCUGACG-GCGU-GCCUGc -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 42197 | 0.77 | 0.207642 |
Target: 5'- aGC-CGCUccACGGC-GCCGCGCGGGCGc -3' miRNA: 3'- aCGcGCGA--UGCUGaCGGCGUGCCUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 29910 | 0.77 | 0.22324 |
Target: 5'- aGCGCGCgaGCGGCUGCgCGagcugGCGGACGc -3' miRNA: 3'- aCGCGCGa-UGCUGACG-GCg----UGCCUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 13939 | 0.77 | 0.22324 |
Target: 5'- gGuCGCGUUGCGGCccaGCCGCGCGGAa- -3' miRNA: 3'- aC-GCGCGAUGCUGa--CGGCGUGCCUgc -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 44022 | 0.77 | 0.22324 |
Target: 5'- gGCGCgGCggGCGGCcGCCGCGCGG-CGg -3' miRNA: 3'- aCGCG-CGa-UGCUGaCGGCGUGCCuGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 30183 | 0.77 | 0.228656 |
Target: 5'- cUGCGCGCcgagGCGGCcGCCGCGCuGGAgGc -3' miRNA: 3'- -ACGCGCGa---UGCUGaCGGCGUG-CCUgC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 77043 | 0.76 | 0.233626 |
Target: 5'- cGCGCGCggcccucgGCGACcgcgccuggccggUGCCGCGCGaGGCGc -3' miRNA: 3'- aCGCGCGa-------UGCUG-------------ACGGCGUGC-CUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 74690 | 0.76 | 0.239822 |
Target: 5'- cGCGCGggAgcUGGCcGCCGCGCGGGCGc -3' miRNA: 3'- aCGCGCgaU--GCUGaCGGCGUGCCUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 35039 | 0.77 | 0.202656 |
Target: 5'- gGCGCGCcgcccuaACGGCgGCCGCGCGGcgGCGg -3' miRNA: 3'- aCGCGCGa------UGCUGaCGGCGUGCC--UGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 29678 | 0.77 | 0.202656 |
Target: 5'- -aCGCGCUguggGCG-CUGCCGCACGuGGCGg -3' miRNA: 3'- acGCGCGA----UGCuGACGGCGUGC-CUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 133858 | 0.78 | 0.197774 |
Target: 5'- gGCGCGC-GCGACUGCCGCGCcuaccuGugGu -3' miRNA: 3'- aCGCGCGaUGCUGACGGCGUGc-----CugC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 133345 | 0.82 | 0.105328 |
Target: 5'- cGCGCGCgcgGCG-CUGCCGCGCaGGGCu -3' miRNA: 3'- aCGCGCGa--UGCuGACGGCGUG-CCUGc -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 68972 | 0.8 | 0.129327 |
Target: 5'- gUGCGCGCcaccGCGGCccuuuucggGCCGCGCGGGCGc -3' miRNA: 3'- -ACGCGCGa---UGCUGa--------CGGCGUGCCUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 53712 | 0.79 | 0.158294 |
Target: 5'- cGCGCGCcgcggccagcUGCGGCgcgcCCGCACGGGCGa -3' miRNA: 3'- aCGCGCG----------AUGCUGac--GGCGUGCCUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 132159 | 0.79 | 0.162302 |
Target: 5'- aGCGCGCcGCcGCUGCaggcaGCGCGGGCGg -3' miRNA: 3'- aCGCGCGaUGcUGACGg----CGUGCCUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 16714 | 0.79 | 0.169326 |
Target: 5'- aGCGCGCgccgguacuggcccuCGGCgaGCCGCGCGGGCGc -3' miRNA: 3'- aCGCGCGau-------------GCUGa-CGGCGUGCCUGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 101138 | 0.78 | 0.174879 |
Target: 5'- cGCGCGa---GGCUGCCGCGCGG-CGg -3' miRNA: 3'- aCGCGCgaugCUGACGGCGUGCCuGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 29409 | 0.78 | 0.18374 |
Target: 5'- cGCGCGCUacGCGGCgGCCGCGgGGcccGCGg -3' miRNA: 3'- aCGCGCGA--UGCUGaCGGCGUgCC---UGC- -5' |
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23839 | 3' | -59.2 | NC_005261.1 | + | 54752 | 0.78 | 0.187855 |
Target: 5'- cGCGCGCU-CGAUcGCCGCcagugcgGCGGGCGa -3' miRNA: 3'- aCGCGCGAuGCUGaCGGCG-------UGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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