miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 10378 0.66 0.737516
Target:  5'- cGCGCGCUGC----GCCGCGCGcuCGu -3'
miRNA:   3'- aCGCGCGAUGcugaCGGCGUGCcuGC- -5'
23839 3' -59.2 NC_005261.1 + 67831 0.66 0.737516
Target:  5'- cGCGCGC-AgGAggGCCGCAcucucCGGGCc -3'
miRNA:   3'- aCGCGCGaUgCUgaCGGCGU-----GCCUGc -5'
23839 3' -59.2 NC_005261.1 + 104939 0.66 0.737516
Target:  5'- cGCGCGC-GCGccaaGCUccGCCGCGCaGGCc -3'
miRNA:   3'- aCGCGCGaUGC----UGA--CGGCGUGcCUGc -5'
23839 3' -59.2 NC_005261.1 + 70646 0.66 0.747063
Target:  5'- cGCgGCGCUGagguuCGGC-GCCGCggccGCGGGCc -3'
miRNA:   3'- aCG-CGCGAU-----GCUGaCGGCG----UGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 134521 0.66 0.737516
Target:  5'- cUGCGC-CUGCaGCUGCugggCGCGCaGACGu -3'
miRNA:   3'- -ACGCGcGAUGcUGACG----GCGUGcCUGC- -5'
23839 3' -59.2 NC_005261.1 + 132082 0.66 0.747063
Target:  5'- cGC-CGUcGCcGCUGCCGCGgaGGGCGg -3'
miRNA:   3'- aCGcGCGaUGcUGACGGCGUg-CCUGC- -5'
23839 3' -59.2 NC_005261.1 + 79820 0.66 0.784192
Target:  5'- aUGCGCGCgGCGGCgcggcgGCCaGCGCa-GCGc -3'
miRNA:   3'- -ACGCGCGaUGCUGa-----CGG-CGUGccUGC- -5'
23839 3' -59.2 NC_005261.1 + 105525 0.66 0.746113
Target:  5'- aGCGCGCccGCccaccgggacucgGGCUgGCCGCACGcGCGc -3'
miRNA:   3'- aCGCGCGa-UG-------------CUGA-CGGCGUGCcUGC- -5'
23839 3' -59.2 NC_005261.1 + 30248 0.66 0.737516
Target:  5'- gGCGCGgUAcuCGACgcGCgGCGCGG-CGg -3'
miRNA:   3'- aCGCGCgAU--GCUGa-CGgCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 112361 0.66 0.747063
Target:  5'- gGCGCGCUGaaGCUGCUGgACucGAUGg -3'
miRNA:   3'- aCGCGCGAUgcUGACGGCgUGc-CUGC- -5'
23839 3' -59.2 NC_005261.1 + 131184 0.66 0.747063
Target:  5'- aGCG-GCUACGcCcGCgGCGCGGuCGc -3'
miRNA:   3'- aCGCgCGAUGCuGaCGgCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 76043 0.66 0.747063
Target:  5'- cGCGCGCcaucaGCGug-GCCG-GCGGGCGc -3'
miRNA:   3'- aCGCGCGa----UGCugaCGGCgUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 13686 0.66 0.747063
Target:  5'- gGCGCGCggGCGugggGCgGgGCGGGCu -3'
miRNA:   3'- aCGCGCGa-UGCuga-CGgCgUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 133663 0.66 0.734634
Target:  5'- cUGCGUGCUcgccuccggcgccaACGGCUcgcuCCGCugGGAg- -3'
miRNA:   3'- -ACGCGCGA--------------UGCUGAc---GGCGugCCUgc -5'
23839 3' -59.2 NC_005261.1 + 4412 0.66 0.747063
Target:  5'- gGCGCGCUGCcgGGCcagGCCucGC-CGGAgGg -3'
miRNA:   3'- aCGCGCGAUG--CUGa--CGG--CGuGCCUgC- -5'
23839 3' -59.2 NC_005261.1 + 106128 0.66 0.737516
Target:  5'- cGCGCGCgcCGGCaa-CGC-CGGACa -3'
miRNA:   3'- aCGCGCGauGCUGacgGCGuGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 111776 0.66 0.747063
Target:  5'- cUGCGCGCccgGgGugUGCC-CcUGGACGc -3'
miRNA:   3'- -ACGCGCGa--UgCugACGGcGuGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 52970 0.66 0.737516
Target:  5'- cGCGcCGgUGCGGCgccgGCagGCGgGGGCGg -3'
miRNA:   3'- aCGC-GCgAUGCUGa---CGg-CGUgCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 122813 0.66 0.735596
Target:  5'- cGCGCGCccgccagcacccGCG-CUGCgGCGCGGuCa -3'
miRNA:   3'- aCGCGCGa-----------UGCuGACGgCGUGCCuGc -5'
23839 3' -59.2 NC_005261.1 + 61114 0.66 0.737516
Target:  5'- cGCGCGCUGCGccgugcGCUGCuuCGCGCa---- -3'
miRNA:   3'- aCGCGCGAUGC------UGACG--GCGUGccugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.