miRNA display CGI


Results 21 - 40 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 126564 0.66 0.747063
Target:  5'- cGCGCGCaAauGCUGCagcaGCGCGcGGCa -3'
miRNA:   3'- aCGCGCGaUgcUGACGg---CGUGC-CUGc -5'
23839 3' -59.2 NC_005261.1 + 105525 0.66 0.746113
Target:  5'- aGCGCGCccGCccaccgggacucgGGCUgGCCGCACGcGCGc -3'
miRNA:   3'- aCGCGCGa-UG-------------CUGA-CGGCGUGCcUGC- -5'
23839 3' -59.2 NC_005261.1 + 10378 0.66 0.737516
Target:  5'- cGCGCGCUGC----GCCGCGCGcuCGu -3'
miRNA:   3'- aCGCGCGAUGcugaCGGCGUGCcuGC- -5'
23839 3' -59.2 NC_005261.1 + 117716 0.66 0.765857
Target:  5'- gGCGCGCgggccCGcaaGCgGCCGCGCGcuGGCGc -3'
miRNA:   3'- aCGCGCGau---GC---UGaCGGCGUGC--CUGC- -5'
23839 3' -59.2 NC_005261.1 + 75620 0.66 0.747063
Target:  5'- gGCGuCGCguacguggACGACguccaCCGCGCGGcCGg -3'
miRNA:   3'- aCGC-GCGa-------UGCUGac---GGCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 68182 0.66 0.750855
Target:  5'- cGCGCGCcGCGggcccccucgcccccGCcGCCGgCGCGGcCGa -3'
miRNA:   3'- aCGCGCGaUGC---------------UGaCGGC-GUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 104939 0.66 0.737516
Target:  5'- cGCGCGC-GCGccaaGCUccGCCGCGCaGGCc -3'
miRNA:   3'- aCGCGCGaUGC----UGA--CGGCGUGcCUGc -5'
23839 3' -59.2 NC_005261.1 + 1869 0.66 0.756513
Target:  5'- aGaCGCGCcGCGAg-GCCaGCACGGcGCGc -3'
miRNA:   3'- aC-GCGCGaUGCUgaCGG-CGUGCC-UGC- -5'
23839 3' -59.2 NC_005261.1 + 22746 0.66 0.753689
Target:  5'- gGCGCGggGCGGCgGCgGCccacgcgucuggggGCGGGCc -3'
miRNA:   3'- aCGCGCgaUGCUGaCGgCG--------------UGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 28582 0.66 0.774169
Target:  5'- gGCGCGCgagcgcCGGCggGCCGCccgcgccgagcugGCGGAg- -3'
miRNA:   3'- aCGCGCGau----GCUGa-CGGCG-------------UGCCUgc -5'
23839 3' -59.2 NC_005261.1 + 79820 0.66 0.784192
Target:  5'- aUGCGCGCgGCGGCgcggcgGCCaGCGCa-GCGc -3'
miRNA:   3'- -ACGCGCGaUGCUGa-----CGG-CGUGccUGC- -5'
23839 3' -59.2 NC_005261.1 + 51973 0.66 0.765857
Target:  5'- cGCGCuGCUggaccGCGGCgccGCCGCcgacuucgaGGACGa -3'
miRNA:   3'- aCGCG-CGA-----UGCUGa--CGGCGug-------CCUGC- -5'
23839 3' -59.2 NC_005261.1 + 30150 0.66 0.765857
Target:  5'- cGCGCGCgccuuaGCGGC-GCCGCGCccGCc -3'
miRNA:   3'- aCGCGCGa-----UGCUGaCGGCGUGccUGc -5'
23839 3' -59.2 NC_005261.1 + 67831 0.66 0.737516
Target:  5'- cGCGCGC-AgGAggGCCGCAcucucCGGGCc -3'
miRNA:   3'- aCGCGCGaUgCUgaCGGCGU-----GCCUGc -5'
23839 3' -59.2 NC_005261.1 + 44730 0.66 0.765857
Target:  5'- aGgGCGCUGCaGCUgggccccgaGCUGCGCGcGACc -3'
miRNA:   3'- aCgCGCGAUGcUGA---------CGGCGUGC-CUGc -5'
23839 3' -59.2 NC_005261.1 + 30038 0.66 0.756513
Target:  5'- aGCGgGCcGCGGcCUGCCGgcCGCGGccuGCGc -3'
miRNA:   3'- aCGCgCGaUGCU-GACGGC--GUGCC---UGC- -5'
23839 3' -59.2 NC_005261.1 + 76451 0.66 0.765857
Target:  5'- cGCGCccgacgGCgacgGCGGCgccggcGCgCGCGCGGACc -3'
miRNA:   3'- aCGCG------CGa---UGCUGa-----CG-GCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 31810 0.66 0.764928
Target:  5'- cGCGCGCUggccugaGCGGC-GCgCGCugGcGCGc -3'
miRNA:   3'- aCGCGCGA-------UGCUGaCG-GCGugCcUGC- -5'
23839 3' -59.2 NC_005261.1 + 126787 0.66 0.765857
Target:  5'- -cCGCGuCUGCGuCUGCCGagagcaGCGcGGCGu -3'
miRNA:   3'- acGCGC-GAUGCuGACGGCg-----UGC-CUGC- -5'
23839 3' -59.2 NC_005261.1 + 127659 0.66 0.760264
Target:  5'- gGCGCGCggguucggggcgggACGGCggcgGCCGCugcccCGG-CGg -3'
miRNA:   3'- aCGCGCGa-------------UGCUGa---CGGCGu----GCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.