miRNA display CGI


Results 21 - 40 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 6412 0.69 0.568548
Target:  5'- cGCGCGUUGgccCGGcCUGCuCGCGaGGGCGg -3'
miRNA:   3'- aCGCGCGAU---GCU-GACG-GCGUgCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 10236 0.67 0.69853
Target:  5'- gGCGgGCccGCGcACUcGCCGCcGCGGGCc -3'
miRNA:   3'- aCGCgCGa-UGC-UGA-CGGCG-UGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 10378 0.66 0.737516
Target:  5'- cGCGCGCUGC----GCCGCGCGcuCGu -3'
miRNA:   3'- aCGCGCGAUGcugaCGGCGUGCcuGC- -5'
23839 3' -59.2 NC_005261.1 + 10504 0.69 0.578478
Target:  5'- uUGCGCGC---GGCcGCCGCuGCGGGCc -3'
miRNA:   3'- -ACGCGCGaugCUGaCGGCG-UGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 10533 0.67 0.718165
Target:  5'- gGCGCGCU-CG-CUGUCGCcccCGGcGCGc -3'
miRNA:   3'- aCGCGCGAuGCuGACGGCGu--GCC-UGC- -5'
23839 3' -59.2 NC_005261.1 + 11928 0.69 0.608464
Target:  5'- gGCG-GCUGCGGCgGCCcGCGcCGcGGCGg -3'
miRNA:   3'- aCGCgCGAUGCUGaCGG-CGU-GC-CUGC- -5'
23839 3' -59.2 NC_005261.1 + 12139 0.68 0.648649
Target:  5'- cGC-CGCcGCGGCgGCCGCGCaGGCc -3'
miRNA:   3'- aCGcGCGaUGCUGaCGGCGUGcCUGc -5'
23839 3' -59.2 NC_005261.1 + 12331 0.75 0.28908
Target:  5'- cGCGCGCUuggccggcGCGGCcGCCGCcGCGG-CGg -3'
miRNA:   3'- aCGCGCGA--------UGCUGaCGGCG-UGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 13100 0.66 0.77233
Target:  5'- gGCGgGCU-CGGCUcgggggcgucggcgGCCGCG-GGGCGc -3'
miRNA:   3'- aCGCgCGAuGCUGA--------------CGGCGUgCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 13650 0.69 0.608464
Target:  5'- aGCGCGCgcCGuGCcGCCGCcGCGGGgGg -3'
miRNA:   3'- aCGCGCGauGC-UGaCGGCG-UGCCUgC- -5'
23839 3' -59.2 NC_005261.1 + 13686 0.66 0.747063
Target:  5'- gGCGCGCggGCGugggGCgGgGCGGGCu -3'
miRNA:   3'- aCGCGCGa-UGCuga-CGgCgUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 13939 0.77 0.22324
Target:  5'- gGuCGCGUUGCGGCccaGCCGCGCGGAa- -3'
miRNA:   3'- aC-GCGCGAUGCUGa--CGGCGUGCCUgc -5'
23839 3' -59.2 NC_005261.1 + 14422 0.68 0.668696
Target:  5'- cGCGCGCUGucucacggaacuCGGCUcGCuCGCG-GGGCGc -3'
miRNA:   3'- aCGCGCGAU------------GCUGA-CG-GCGUgCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 14965 0.68 0.628551
Target:  5'- gGCGUGCcugggGCGACUgcgcgGCCGCGcCGGcCGc -3'
miRNA:   3'- aCGCGCGa----UGCUGA-----CGGCGU-GCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 15849 0.7 0.538065
Target:  5'- aGCGCGCUagaggacgaggucGCGGCaaugGCucgagucgccgaCGCGCGGGCGc -3'
miRNA:   3'- aCGCGCGA-------------UGCUGa---CG------------GCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 16714 0.79 0.169326
Target:  5'- aGCGCGCgccgguacuggcccuCGGCgaGCCGCGCGGGCGc -3'
miRNA:   3'- aCGCGCGau-------------GCUGa-CGGCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 19150 0.68 0.638602
Target:  5'- gGCGCGC-ACGGCcaGCCG-GCGGAUc -3'
miRNA:   3'- aCGCGCGaUGCUGa-CGGCgUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 20120 0.66 0.763065
Target:  5'- gGCGCGCgggcccgcaGCGGCUccgcgagcgcucagGCCGCGCcGGCu -3'
miRNA:   3'- aCGCGCGa--------UGCUGA--------------CGGCGUGcCUGc -5'
23839 3' -59.2 NC_005261.1 + 20294 0.68 0.662691
Target:  5'- gGCGCGCUugcggcagaaaaacgGCGACUgggccccgaGCCGCGCacgagcGACGc -3'
miRNA:   3'- aCGCGCGA---------------UGCUGA---------CGGCGUGc-----CUGC- -5'
23839 3' -59.2 NC_005261.1 + 20567 0.69 0.578478
Target:  5'- gGCuGCGCaGCGGCgccgGCgGCGCGGGUGg -3'
miRNA:   3'- aCG-CGCGaUGCUGa---CGgCGUGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.