miRNA display CGI


Results 21 - 40 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 46681 0.76 0.245574
Target:  5'- cGCGCGCUccACGGCgGCCGcCACGG-Ca -3'
miRNA:   3'- aCGCGCGA--UGCUGaCGGC-GUGCCuGc -5'
23839 3' -59.2 NC_005261.1 + 54051 0.76 0.259846
Target:  5'- cGCGCGCggugcgcuucgguagUGCGGuCgaagGCCGCGCGGACc -3'
miRNA:   3'- aCGCGCG---------------AUGCU-Ga---CGGCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 42241 0.76 0.263518
Target:  5'- cGCGCGCaGCGccucgaACUGcCCGCGCGaGGCGg -3'
miRNA:   3'- aCGCGCGaUGC------UGAC-GGCGUGC-CUGC- -5'
23839 3' -59.2 NC_005261.1 + 29940 0.75 0.276063
Target:  5'- nGCuGCGCUGCGGcCUGCCGCgaggcgcuagagGCGGcGCGg -3'
miRNA:   3'- aCG-CGCGAUGCU-GACGGCG------------UGCC-UGC- -5'
23839 3' -59.2 NC_005261.1 + 131726 0.75 0.276063
Target:  5'- gGCGCGCUucggUGGgUGCUGCacGCGGACGg -3'
miRNA:   3'- aCGCGCGAu---GCUgACGGCG--UGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 99392 0.75 0.282512
Target:  5'- cUGCaccuCGCUggGCGGCUGCCGCACGaGCGu -3'
miRNA:   3'- -ACGc---GCGA--UGCUGACGGCGUGCcUGC- -5'
23839 3' -59.2 NC_005261.1 + 12331 0.75 0.28908
Target:  5'- cGCGCGCUuggccggcGCGGCcGCCGCcGCGG-CGg -3'
miRNA:   3'- aCGCGCGA--------UGCUGaCGGCG-UGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 3884 0.75 0.295767
Target:  5'- gGCGCGCagcuCGGCgagcGCgGCGCGGGCGc -3'
miRNA:   3'- aCGCGCGau--GCUGa---CGgCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 44229 0.75 0.295767
Target:  5'- cGCGCGCUGCuGGCcGCCcagcGCGCGGcCGa -3'
miRNA:   3'- aCGCGCGAUG-CUGaCGG----CGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 39351 0.74 0.301888
Target:  5'- cUGCGCGCgGCGGCaGCCGCcucaucgGCGGcCGg -3'
miRNA:   3'- -ACGCGCGaUGCUGaCGGCG-------UGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 51213 0.74 0.302574
Target:  5'- gGCGCGCUGCuGCUgggcgcgcuaGCCGCcUGGACGc -3'
miRNA:   3'- aCGCGCGAUGcUGA----------CGGCGuGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 96616 0.74 0.309501
Target:  5'- cGCGCGUgGCGcGCaGCCGC-CGGGCGa -3'
miRNA:   3'- aCGCGCGaUGC-UGaCGGCGuGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 95650 0.74 0.309501
Target:  5'- aGCGCGacgcGCGGC-GCCGCgACGGGCGc -3'
miRNA:   3'- aCGCGCga--UGCUGaCGGCG-UGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 104258 0.74 0.3102
Target:  5'- cGCGCGCgagcgccgcggucuCGGCgGCUGCGCGGGCc -3'
miRNA:   3'- aCGCGCGau------------GCUGaCGGCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 97388 0.74 0.322993
Target:  5'- cGCGCgGCUuucGCGcCUGCCGCgggcuugGCGGGCGc -3'
miRNA:   3'- aCGCG-CGA---UGCuGACGGCG-------UGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 103852 0.74 0.331003
Target:  5'- uUGCGCGCgagccgcgGCGGCggcggggcggcGCCGC-CGGGCGg -3'
miRNA:   3'- -ACGCGCGa-------UGCUGa----------CGGCGuGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 118574 0.74 0.331003
Target:  5'- cGCGCGCgcgGCGGCgcgcGCCGCcgccGCGGAg- -3'
miRNA:   3'- aCGCGCGa--UGCUGa---CGGCG----UGCCUgc -5'
23839 3' -59.2 NC_005261.1 + 102946 0.74 0.338411
Target:  5'- cGC-CGCUGCGGCgGCgGCcGCGGGCGc -3'
miRNA:   3'- aCGcGCGAUGCUGaCGgCG-UGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 38927 0.73 0.345938
Target:  5'- cGCGCGCcaagcCGGCgGCCGgGCGGGCc -3'
miRNA:   3'- aCGCGCGau---GCUGaCGGCgUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 1920 0.73 0.353585
Target:  5'- aGCGCGCgGCGcACUGCgC-CGCGGGCa -3'
miRNA:   3'- aCGCGCGaUGC-UGACG-GcGUGCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.