miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 64061 0.86 0.056132
Target:  5'- gGUGCGCcacCGGCUGCCGCACGGugGc -3'
miRNA:   3'- aCGCGCGau-GCUGACGGCGUGCCugC- -5'
23839 3' -59.2 NC_005261.1 + 133345 0.82 0.105328
Target:  5'- cGCGCGCgcgGCG-CUGCCGCGCaGGGCu -3'
miRNA:   3'- aCGCGCGa--UGCuGACGGCGUG-CCUGc -5'
23839 3' -59.2 NC_005261.1 + 68972 0.8 0.129327
Target:  5'- gUGCGCGCcaccGCGGCccuuuucggGCCGCGCGGGCGc -3'
miRNA:   3'- -ACGCGCGa---UGCUGa--------CGGCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 53712 0.79 0.158294
Target:  5'- cGCGCGCcgcggccagcUGCGGCgcgcCCGCACGGGCGa -3'
miRNA:   3'- aCGCGCG----------AUGCUGac--GGCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 132159 0.79 0.162302
Target:  5'- aGCGCGCcGCcGCUGCaggcaGCGCGGGCGg -3'
miRNA:   3'- aCGCGCGaUGcUGACGg----CGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 16714 0.79 0.169326
Target:  5'- aGCGCGCgccgguacuggcccuCGGCgaGCCGCGCGGGCGc -3'
miRNA:   3'- aCGCGCGau-------------GCUGa-CGGCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 101138 0.78 0.174879
Target:  5'- cGCGCGa---GGCUGCCGCGCGG-CGg -3'
miRNA:   3'- aCGCGCgaugCUGACGGCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 29409 0.78 0.18374
Target:  5'- cGCGCGCUacGCGGCgGCCGCGgGGcccGCGg -3'
miRNA:   3'- aCGCGCGA--UGCUGaCGGCGUgCC---UGC- -5'
23839 3' -59.2 NC_005261.1 + 54752 0.78 0.187855
Target:  5'- cGCGCGCU-CGAUcGCCGCcagugcgGCGGGCGa -3'
miRNA:   3'- aCGCGCGAuGCUGaCGGCG-------UGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 133858 0.78 0.197774
Target:  5'- gGCGCGC-GCGACUGCCGCGCcuaccuGugGu -3'
miRNA:   3'- aCGCGCGaUGCUGACGGCGUGc-----CugC- -5'
23839 3' -59.2 NC_005261.1 + 35039 0.77 0.202656
Target:  5'- gGCGCGCcgcccuaACGGCgGCCGCGCGGcgGCGg -3'
miRNA:   3'- aCGCGCGa------UGCUGaCGGCGUGCC--UGC- -5'
23839 3' -59.2 NC_005261.1 + 29678 0.77 0.202656
Target:  5'- -aCGCGCUguggGCG-CUGCCGCACGuGGCGg -3'
miRNA:   3'- acGCGCGA----UGCuGACGGCGUGC-CUGC- -5'
23839 3' -59.2 NC_005261.1 + 38521 0.77 0.207642
Target:  5'- gGCGCGCgcUGGCUGCgCGCGcCGGGCa -3'
miRNA:   3'- aCGCGCGauGCUGACG-GCGU-GCCUGc -5'
23839 3' -59.2 NC_005261.1 + 42197 0.77 0.207642
Target:  5'- aGC-CGCUccACGGC-GCCGCGCGGGCGc -3'
miRNA:   3'- aCGcGCGA--UGCUGaCGGCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 44022 0.77 0.22324
Target:  5'- gGCGCgGCggGCGGCcGCCGCGCGG-CGg -3'
miRNA:   3'- aCGCG-CGa-UGCUGaCGGCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 13939 0.77 0.22324
Target:  5'- gGuCGCGUUGCGGCccaGCCGCGCGGAa- -3'
miRNA:   3'- aC-GCGCGAUGCUGa--CGGCGUGCCUgc -5'
23839 3' -59.2 NC_005261.1 + 29910 0.77 0.22324
Target:  5'- aGCGCGCgaGCGGCUGCgCGagcugGCGGACGc -3'
miRNA:   3'- aCGCGCGa-UGCUGACG-GCg----UGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 30183 0.77 0.228656
Target:  5'- cUGCGCGCcgagGCGGCcGCCGCGCuGGAgGc -3'
miRNA:   3'- -ACGCGCGa---UGCUGaCGGCGUG-CCUgC- -5'
23839 3' -59.2 NC_005261.1 + 77043 0.76 0.233626
Target:  5'- cGCGCGCggcccucgGCGACcgcgccuggccggUGCCGCGCGaGGCGc -3'
miRNA:   3'- aCGCGCGa-------UGCUG-------------ACGGCGUGC-CUGC- -5'
23839 3' -59.2 NC_005261.1 + 74690 0.76 0.239822
Target:  5'- cGCGCGggAgcUGGCcGCCGCGCGGGCGc -3'
miRNA:   3'- aCGCGCgaU--GCUGaCGGCGUGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.