miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 262 0.69 0.568548
Target:  5'- gGCG-GCUGCGGCggcgGCUGCgGCGG-CGg -3'
miRNA:   3'- aCGCgCGAUGCUGa---CGGCG-UGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 298 0.69 0.568548
Target:  5'- gGCG-GCUGCGGCggcgGCUGCgGCGG-CGg -3'
miRNA:   3'- aCGCgCGAUGCUGa---CGGCG-UGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 334 0.67 0.69853
Target:  5'- gGCG-GCUGCGGCgGCCcgcagcccgGCGCGGcccgGCGg -3'
miRNA:   3'- aCGCgCGAUGCUGaCGG---------CGUGCC----UGC- -5'
23839 3' -59.2 NC_005261.1 + 553 0.68 0.628551
Target:  5'- gGCG-GCU-CGGCcGCCGCGCGGugACa -3'
miRNA:   3'- aCGCgCGAuGCUGaCGGCGUGCC--UGc -5'
23839 3' -59.2 NC_005261.1 + 1046 0.69 0.588445
Target:  5'- gGCGgGCgGCGGCguuaGCgGCGCGGGgGg -3'
miRNA:   3'- aCGCgCGaUGCUGa---CGgCGUGCCUgC- -5'
23839 3' -59.2 NC_005261.1 + 1400 0.7 0.548823
Target:  5'- gGCGcCGCggccGCGGCgGCgGCGgGGGCGg -3'
miRNA:   3'- aCGC-GCGa---UGCUGaCGgCGUgCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 1703 0.67 0.718165
Target:  5'- -aCGCGCUGCcgguacucGCgcgGCgGCACGGGCa -3'
miRNA:   3'- acGCGCGAUGc-------UGa--CGgCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 1869 0.66 0.756513
Target:  5'- aGaCGCGCcGCGAg-GCCaGCACGGcGCGc -3'
miRNA:   3'- aC-GCGCGaUGCUgaCGG-CGUGCC-UGC- -5'
23839 3' -59.2 NC_005261.1 + 1920 0.73 0.353585
Target:  5'- aGCGCGCgGCGcACUGCgC-CGCGGGCa -3'
miRNA:   3'- aCGCGCGaUGC-UGACG-GcGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 2389 0.72 0.393581
Target:  5'- gGCGCGCUgGCGGCgagcgcGCC-CGCGGGCc -3'
miRNA:   3'- aCGCGCGA-UGCUGa-----CGGcGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 2544 0.69 0.608464
Target:  5'- cGCcaGCGCcGCGGC-GCUggGCGCGGGCGu -3'
miRNA:   3'- aCG--CGCGaUGCUGaCGG--CGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 2603 0.7 0.500558
Target:  5'- aGC-CGCcgucgGCGGCgggGCCGC-CGGGCGg -3'
miRNA:   3'- aCGcGCGa----UGCUGa--CGGCGuGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 2652 0.68 0.628551
Target:  5'- gGCGgGCagcgGCGGCUcccGCCGCGCuggGGACc -3'
miRNA:   3'- aCGCgCGa---UGCUGA---CGGCGUG---CCUGc -5'
23839 3' -59.2 NC_005261.1 + 2740 0.68 0.618503
Target:  5'- cGCuuGCGCcGCGGCggGCCGuCGCGG-CGg -3'
miRNA:   3'- aCG--CGCGaUGCUGa-CGGC-GUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 3426 0.67 0.72788
Target:  5'- aGCGCGCggGCcagcguccaGGCgGgCGCGCGGGCc -3'
miRNA:   3'- aCGCGCGa-UG---------CUGaCgGCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 3838 0.72 0.418084
Target:  5'- cGgGCGCUggcggcaGCGGCgccggcGCCGCGCGGcCGg -3'
miRNA:   3'- aCgCGCGA-------UGCUGa-----CGGCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 3884 0.75 0.295767
Target:  5'- gGCGCGCagcuCGGCgagcGCgGCGCGGGCGc -3'
miRNA:   3'- aCGCGCGau--GCUGa---CGgCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 4412 0.66 0.747063
Target:  5'- gGCGCGCUGCcgGGCcagGCCucGC-CGGAgGg -3'
miRNA:   3'- aCGCGCGAUG--CUGa--CGG--CGuGCCUgC- -5'
23839 3' -59.2 NC_005261.1 + 4481 0.72 0.393581
Target:  5'- cGCgGCGCcGCGGCguaGCCuGCGCGGGCc -3'
miRNA:   3'- aCG-CGCGaUGCUGa--CGG-CGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 4516 0.67 0.72788
Target:  5'- cGCGCGCccgcGCGGgcGCCGCGgcgaGGGCGc -3'
miRNA:   3'- aCGCGCGa---UGCUgaCGGCGUg---CCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.