miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 138224 0.68 0.628551
Target:  5'- gGCG-GCU-CGGCcGCCGCGCGGugACa -3'
miRNA:   3'- aCGCgCGAuGCUGaCGGCGUGCC--UGc -5'
23839 3' -59.2 NC_005261.1 + 137981 0.69 0.568548
Target:  5'- gGCG-GCUGCGGCggcgGCUGCgGCGG-CGg -3'
miRNA:   3'- aCGCgCGAUGCUGa---CGGCG-UGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 137945 0.69 0.568548
Target:  5'- gGCG-GCUGCGGCggcgGCUGCgGCGG-CGg -3'
miRNA:   3'- aCGCgCGAUGCUGa---CGGCG-UGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 136607 0.68 0.658682
Target:  5'- aGCGUGgaGCGGCgcGCgCGCGCcgaGGGCGg -3'
miRNA:   3'- aCGCGCgaUGCUGa-CG-GCGUG---CCUGC- -5'
23839 3' -59.2 NC_005261.1 + 135765 0.68 0.628551
Target:  5'- gGUGCGCUcCGGCgcagagcgcgUGCCGCuguCGGAgGu -3'
miRNA:   3'- aCGCGCGAuGCUG----------ACGGCGu--GCCUgC- -5'
23839 3' -59.2 NC_005261.1 + 135641 0.7 0.500558
Target:  5'- aUGCGCuGCUAC--CUGCgcggGCGCGGGCGg -3'
miRNA:   3'- -ACGCG-CGAUGcuGACGg---CGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 135430 0.7 0.529317
Target:  5'- gGUGCGCUcgcACGcCgcccagGCgGCGCGGGCGc -3'
miRNA:   3'- aCGCGCGA---UGCuGa-----CGgCGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 135179 0.68 0.618503
Target:  5'- aGCuCGCUGCGGCU--CGCGCGGAg- -3'
miRNA:   3'- aCGcGCGAUGCUGAcgGCGUGCCUgc -5'
23839 3' -59.2 NC_005261.1 + 134567 0.7 0.529317
Target:  5'- gGCgGCGCcGCGGCUG-CGCA-GGGCGg -3'
miRNA:   3'- aCG-CGCGaUGCUGACgGCGUgCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 134521 0.66 0.737516
Target:  5'- cUGCGC-CUGCaGCUGCugggCGCGCaGACGu -3'
miRNA:   3'- -ACGCGcGAUGcUGACG----GCGUGcCUGC- -5'
23839 3' -59.2 NC_005261.1 + 134362 0.73 0.353585
Target:  5'- cGcCGCGCgggggGCGGC-GCCGCugGcGACGg -3'
miRNA:   3'- aC-GCGCGa----UGCUGaCGGCGugC-CUGC- -5'
23839 3' -59.2 NC_005261.1 + 134209 0.66 0.775086
Target:  5'- gGCGCGCgggucGCGGCgGCCGgcaGCGucGGCGu -3'
miRNA:   3'- aCGCGCGa----UGCUGaCGGCg--UGC--CUGC- -5'
23839 3' -59.2 NC_005261.1 + 133903 0.73 0.36135
Target:  5'- gGCGCGCUGCuggccuGGCUGCUGUACGucGCGu -3'
miRNA:   3'- aCGCGCGAUG------CUGACGGCGUGCc-UGC- -5'
23839 3' -59.2 NC_005261.1 + 133858 0.78 0.197774
Target:  5'- gGCGCGC-GCGACUGCCGCGCcuaccuGugGu -3'
miRNA:   3'- aCGCGCGaUGCUGACGGCGUGc-----CugC- -5'
23839 3' -59.2 NC_005261.1 + 133718 0.7 0.500558
Target:  5'- gGCGcCGuCUACGuCgggGCgGCGCGGACa -3'
miRNA:   3'- aCGC-GC-GAUGCuGa--CGgCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 133663 0.66 0.734634
Target:  5'- cUGCGUGCUcgccuccggcgccaACGGCUcgcuCCGCugGGAg- -3'
miRNA:   3'- -ACGCGCGA--------------UGCUGAc---GGCGugCCUgc -5'
23839 3' -59.2 NC_005261.1 + 133544 0.72 0.426746
Target:  5'- gGCGCGCaGCGcaGCaUGCUGCucgggggGCGGACGg -3'
miRNA:   3'- aCGCGCGaUGC--UG-ACGGCG-------UGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 133345 0.82 0.105328
Target:  5'- cGCGCGCgcgGCG-CUGCCGCGCaGGGCu -3'
miRNA:   3'- aCGCGCGa--UGCuGACGGCGUG-CCUGc -5'
23839 3' -59.2 NC_005261.1 + 133033 0.67 0.718165
Target:  5'- gGCGCGCcaccgcgcACGcACgUGCUGCGCGG-CGu -3'
miRNA:   3'- aCGCGCGa-------UGC-UG-ACGGCGUGCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 132823 0.66 0.775086
Target:  5'- cUGCGCGaCUucgcuuucguCGACgcgGCCgucuacacGCACGGGCa -3'
miRNA:   3'- -ACGCGC-GAu---------GCUGa--CGG--------CGUGCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.