miRNA display CGI


Results 21 - 40 of 380 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23839 3' -59.2 NC_005261.1 + 108165 0.66 0.775086
Target:  5'- aGCGCGUccgccaggGCGcGCgGCCGCGgcucCGGGCGc -3'
miRNA:   3'- aCGCGCGa-------UGC-UGaCGGCGU----GCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 134209 0.66 0.775086
Target:  5'- gGCGCGCgggucGCGGCgGCCGgcaGCGucGGCGu -3'
miRNA:   3'- aCGCGCGa----UGCUGaCGGCg--UGC--CUGC- -5'
23839 3' -59.2 NC_005261.1 + 31885 0.66 0.775086
Target:  5'- cGCGCGCgcCGAg-GCCGCuuACGcGCGg -3'
miRNA:   3'- aCGCGCGauGCUgaCGGCG--UGCcUGC- -5'
23839 3' -59.2 NC_005261.1 + 52667 0.66 0.775086
Target:  5'- cGCGCGCacuucgaGCGGgccCUGCU-CGCGGGCGc -3'
miRNA:   3'- aCGCGCGa------UGCU---GACGGcGUGCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 28582 0.66 0.774169
Target:  5'- gGCGCGCgagcgcCGGCggGCCGCccgcgccgagcugGCGGAg- -3'
miRNA:   3'- aCGCGCGau----GCUGa-CGGCG-------------UGCCUgc -5'
23839 3' -59.2 NC_005261.1 + 95732 0.66 0.774169
Target:  5'- cGcCGCGCUcaGCGGCgccGCCGCcgccgccGgGGGCGc -3'
miRNA:   3'- aC-GCGCGA--UGCUGa--CGGCG-------UgCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 13100 0.66 0.77233
Target:  5'- gGCGgGCU-CGGCUcgggggcgucggcgGCCGCG-GGGCGc -3'
miRNA:   3'- aCGCgCGAuGCUGA--------------CGGCGUgCCUGC- -5'
23839 3' -59.2 NC_005261.1 + 126787 0.66 0.765857
Target:  5'- -cCGCGuCUGCGuCUGCCGagagcaGCGcGGCGu -3'
miRNA:   3'- acGCGC-GAUGCuGACGGCg-----UGC-CUGC- -5'
23839 3' -59.2 NC_005261.1 + 44730 0.66 0.765857
Target:  5'- aGgGCGCUGCaGCUgggccccgaGCUGCGCGcGACc -3'
miRNA:   3'- aCgCGCGAUGcUGA---------CGGCGUGC-CUGc -5'
23839 3' -59.2 NC_005261.1 + 120368 0.66 0.765857
Target:  5'- gGUGCGCgACGGC-GCCGCGCccucGCGc -3'
miRNA:   3'- aCGCGCGaUGCUGaCGGCGUGcc--UGC- -5'
23839 3' -59.2 NC_005261.1 + 51973 0.66 0.765857
Target:  5'- cGCGCuGCUggaccGCGGCgccGCCGCcgacuucgaGGACGa -3'
miRNA:   3'- aCGCG-CGA-----UGCUGa--CGGCGug-------CCUGC- -5'
23839 3' -59.2 NC_005261.1 + 75849 0.66 0.765857
Target:  5'- gGCGCGCggcgccgACGGCgGCCccgacgGCGCcguGGGCGc -3'
miRNA:   3'- aCGCGCGa------UGCUGaCGG------CGUG---CCUGC- -5'
23839 3' -59.2 NC_005261.1 + 76451 0.66 0.765857
Target:  5'- cGCGCccgacgGCgacgGCGGCgccggcGCgCGCGCGGACc -3'
miRNA:   3'- aCGCG------CGa---UGCUGa-----CG-GCGUGCCUGc -5'
23839 3' -59.2 NC_005261.1 + 30150 0.66 0.765857
Target:  5'- cGCGCGCgccuuaGCGGC-GCCGCGCccGCc -3'
miRNA:   3'- aCGCGCGa-----UGCUGaCGGCGUGccUGc -5'
23839 3' -59.2 NC_005261.1 + 117716 0.66 0.765857
Target:  5'- gGCGCGCgggccCGcaaGCgGCCGCGCGcuGGCGc -3'
miRNA:   3'- aCGCGCGau---GC---UGaCGGCGUGC--CUGC- -5'
23839 3' -59.2 NC_005261.1 + 31810 0.66 0.764928
Target:  5'- cGCGCGCUggccugaGCGGC-GCgCGCugGcGCGc -3'
miRNA:   3'- aCGCGCGA-------UGCUGaCG-GCGugCcUGC- -5'
23839 3' -59.2 NC_005261.1 + 20120 0.66 0.763065
Target:  5'- gGCGCGCgggcccgcaGCGGCUccgcgagcgcucagGCCGCGCcGGCu -3'
miRNA:   3'- aCGCGCGa--------UGCUGA--------------CGGCGUGcCUGc -5'
23839 3' -59.2 NC_005261.1 + 127659 0.66 0.760264
Target:  5'- gGCGCGCggguucggggcgggACGGCggcgGCCGCugcccCGG-CGg -3'
miRNA:   3'- aCGCGCGa-------------UGCUGa---CGGCGu----GCCuGC- -5'
23839 3' -59.2 NC_005261.1 + 30038 0.66 0.756513
Target:  5'- aGCGgGCcGCGGcCUGCCGgcCGCGGccuGCGc -3'
miRNA:   3'- aCGCgCGaUGCU-GACGGC--GUGCC---UGC- -5'
23839 3' -59.2 NC_005261.1 + 42913 0.66 0.756513
Target:  5'- --gGCGCUcCGGg-GCCGC-CGGGCGa -3'
miRNA:   3'- acgCGCGAuGCUgaCGGCGuGCCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.