miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 72143 0.66 0.880688
Target:  5'- cCGGGUGCGAcuGCACGuccGGGGUGUccggGAUCc -3'
miRNA:   3'- uGCUCGCGCU--CGUGC---UCUCGCG----UUAG- -5'
23840 5' -56.3 NC_005261.1 + 25286 0.66 0.880688
Target:  5'- -gGGGCGCGgucuguGGC-CGuGAGCGUcGUCg -3'
miRNA:   3'- ugCUCGCGC------UCGuGCuCUCGCGuUAG- -5'
23840 5' -56.3 NC_005261.1 + 21827 0.66 0.880688
Target:  5'- gGCGGGCGCGcGUGCGGGcGgGC--UCg -3'
miRNA:   3'- -UGCUCGCGCuCGUGCUCuCgCGuuAG- -5'
23840 5' -56.3 NC_005261.1 + 57674 0.66 0.880688
Target:  5'- cGCGAGCGCcagccggcgGGGCAC-AGGGCcaGCAGg- -3'
miRNA:   3'- -UGCUCGCG---------CUCGUGcUCUCG--CGUUag -5'
23840 5' -56.3 NC_005261.1 + 63361 0.66 0.880688
Target:  5'- cACGguGGCGCG-GUGCGGGuGUGCcgGGUCg -3'
miRNA:   3'- -UGC--UCGCGCuCGUGCUCuCGCG--UUAG- -5'
23840 5' -56.3 NC_005261.1 + 96069 0.66 0.880688
Target:  5'- cACGAcGCcCGAGCAgGuGAGUGCGGc- -3'
miRNA:   3'- -UGCU-CGcGCUCGUgCuCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 106639 0.66 0.880688
Target:  5'- gACGAGCucgGCGAcgucGCGCucGccGGCGCGGUCg -3'
miRNA:   3'- -UGCUCG---CGCU----CGUGcuC--UCGCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 55203 0.66 0.876365
Target:  5'- gGCGuAGCGCGgauccggcggcccgaGGCgGCGAGGGCgGCAGc- -3'
miRNA:   3'- -UGC-UCGCGC---------------UCG-UGCUCUCG-CGUUag -5'
23840 5' -56.3 NC_005261.1 + 49469 0.66 0.873438
Target:  5'- gGCGGGCGCGcaggccGCGCGGaAGCuGCAGc- -3'
miRNA:   3'- -UGCUCGCGCu-----CGUGCUcUCG-CGUUag -5'
23840 5' -56.3 NC_005261.1 + 19265 0.66 0.873438
Target:  5'- aGCGcGCGCGGGUACGccAGCGUc-UCg -3'
miRNA:   3'- -UGCuCGCGCUCGUGCucUCGCGuuAG- -5'
23840 5' -56.3 NC_005261.1 + 43846 0.66 0.873438
Target:  5'- gGCGAGgGCGAGgACGcGGccGCGUcGUCc -3'
miRNA:   3'- -UGCUCgCGCUCgUGCuCU--CGCGuUAG- -5'
23840 5' -56.3 NC_005261.1 + 78867 0.66 0.873438
Target:  5'- -gGAGCGCGAGCcGCGucAGC-CGGUUc -3'
miRNA:   3'- ugCUCGCGCUCG-UGCucUCGcGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 131462 0.66 0.873438
Target:  5'- cGCGGGCGCcucccGCcuccGCGAGcGCGCcGUCg -3'
miRNA:   3'- -UGCUCGCGcu---CG----UGCUCuCGCGuUAG- -5'
23840 5' -56.3 NC_005261.1 + 47062 0.66 0.873438
Target:  5'- cACGGGC-CGAGCGCGuGGuacgcGUGCAcgCc -3'
miRNA:   3'- -UGCUCGcGCUCGUGCuCU-----CGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 98049 0.66 0.873438
Target:  5'- gGCGGcCGCGGGCgGCGGGAcCGCGggCg -3'
miRNA:   3'- -UGCUcGCGCUCG-UGCUCUcGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 40057 0.66 0.8727
Target:  5'- gACGGGCccguGCugGAGCACGAGgguccccgcuggcAGCGC-GUCg -3'
miRNA:   3'- -UGCUCG----CG--CUCGUGCUC-------------UCGCGuUAG- -5'
23840 5' -56.3 NC_005261.1 + 53035 0.66 0.865966
Target:  5'- cGCG-GCGCcgGGGCAgccguCGGGAGgGCAGUg -3'
miRNA:   3'- -UGCuCGCG--CUCGU-----GCUCUCgCGUUAg -5'
23840 5' -56.3 NC_005261.1 + 67100 0.66 0.865966
Target:  5'- cGCGA-CGCG-GUGCGGGcGGCGCGcgCa -3'
miRNA:   3'- -UGCUcGCGCuCGUGCUC-UCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 127833 0.66 0.865966
Target:  5'- cGCGGcCGCGAGCAgCGGacGGgGCGGUCg -3'
miRNA:   3'- -UGCUcGCGCUCGU-GCUc-UCgCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 93862 0.66 0.864446
Target:  5'- cACGAgGCGCGcGCACuccuuccagcucAGcAGCGCGGUCg -3'
miRNA:   3'- -UGCU-CGCGCuCGUGc-----------UC-UCGCGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.