miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 44199 0.84 0.11352
Target:  5'- aGCGAGCGCGAGCugcaggcggccCGGGAGCGCGcgCu -3'
miRNA:   3'- -UGCUCGCGCUCGu----------GCUCUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 72471 0.84 0.116563
Target:  5'- gGCGAGCGCGAGCGCGgccagcgccaGGAGCGCc--- -3'
miRNA:   3'- -UGCUCGCGCUCGUGC----------UCUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 71341 0.82 0.143779
Target:  5'- cGCGAGCGCguccucgguGAGCGcCGAGAGCGCGAg- -3'
miRNA:   3'- -UGCUCGCG---------CUCGU-GCUCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 95676 0.82 0.155407
Target:  5'- cGCGGGUGUGAGCACGugcacGAGCGCGAg- -3'
miRNA:   3'- -UGCUCGCGCUCGUGCu----CUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 107257 0.81 0.163626
Target:  5'- cGCGGGCGCGcgGGCACGGGcgGGCGCGcAUCa -3'
miRNA:   3'- -UGCUCGCGC--UCGUGCUC--UCGCGU-UAG- -5'
23840 5' -56.3 NC_005261.1 + 105291 0.79 0.210811
Target:  5'- gGCGAGCcCGGGCGCGcGAGCGCGggGUCc -3'
miRNA:   3'- -UGCUCGcGCUCGUGCuCUCGCGU--UAG- -5'
23840 5' -56.3 NC_005261.1 + 112918 0.79 0.221555
Target:  5'- uGCGuGCGCGAGgGCGAGGGCgGCGcgCu -3'
miRNA:   3'- -UGCuCGCGCUCgUGCUCUCG-CGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 92694 0.78 0.256603
Target:  5'- gGCGAGCGgGAGCgggaGCGGGAGCGgGAg- -3'
miRNA:   3'- -UGCUCGCgCUCG----UGCUCUCGCgUUag -5'
23840 5' -56.3 NC_005261.1 + 56101 0.78 0.262868
Target:  5'- aGCGGcuccuGCGCGAGCgGCGGGAGCGCGc-- -3'
miRNA:   3'- -UGCU-----CGCGCUCG-UGCUCUCGCGUuag -5'
23840 5' -56.3 NC_005261.1 + 122634 0.78 0.262868
Target:  5'- gGCGAGCGCGAggcccggcgcgcGUACGuGGGCGCGAa- -3'
miRNA:   3'- -UGCUCGCGCU------------CGUGCuCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 58574 0.78 0.269257
Target:  5'- cGCGAGCgGCGAGCGCGAGAcCuuGAUCa -3'
miRNA:   3'- -UGCUCG-CGCUCGUGCUCUcGcgUUAG- -5'
23840 5' -56.3 NC_005261.1 + 75497 0.78 0.269257
Target:  5'- uACGAGCGCGGggcGCugGAG-GCGCAcgCc -3'
miRNA:   3'- -UGCUCGCGCU---CGugCUCuCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 98358 0.77 0.296064
Target:  5'- gGCGGGgGUGGGCGCGGGcucuggcgGGCGCAAUa -3'
miRNA:   3'- -UGCUCgCGCUCGUGCUC--------UCGCGUUAg -5'
23840 5' -56.3 NC_005261.1 + 132533 0.77 0.303082
Target:  5'- uACGAGCGCGcccucgcGCGCGAGggcgaGGCGCAGUa -3'
miRNA:   3'- -UGCUCGCGCu------CGUGCUC-----UCGCGUUAg -5'
23840 5' -56.3 NC_005261.1 + 15551 0.77 0.310227
Target:  5'- cGCGAcGCGCGGGCAgGAGGcgaaCGCGGUCg -3'
miRNA:   3'- -UGCU-CGCGCUCGUgCUCUc---GCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 128456 0.77 0.310227
Target:  5'- gGCGGuCGCGAGCACGAcgagcagcGAGCGCGAc- -3'
miRNA:   3'- -UGCUcGCGCUCGUGCU--------CUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 46152 0.76 0.327896
Target:  5'- cCGAGCGCG-GCAcugcgccccagucgcCGAuGGGCGCAGUCg -3'
miRNA:   3'- uGCUCGCGCuCGU---------------GCU-CUCGCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 105124 0.76 0.340084
Target:  5'- cGCGGGCGCGGGC-CGccGGCGCGcgCa -3'
miRNA:   3'- -UGCUCGCGCUCGuGCucUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 121135 0.76 0.340084
Target:  5'- cGCGGGCGCGAGCGCGAGuaggaccGgGUAGg- -3'
miRNA:   3'- -UGCUCGCGCUCGUGCUCu------CgCGUUag -5'
23840 5' -56.3 NC_005261.1 + 126955 0.76 0.347866
Target:  5'- cCGGGCGCGGGgGCGGcAGCGCGAa- -3'
miRNA:   3'- uGCUCGCGCUCgUGCUcUCGCGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.