miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 131649 0.66 0.842285
Target:  5'- gACGGGCccccCGGGCgcaccgucuGCGAGGGUGCGAc- -3'
miRNA:   3'- -UGCUCGc---GCUCG---------UGCUCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 1729 0.66 0.858279
Target:  5'- cACGGGCaccGCGGuGCGCGGGcccaGGCGCGu-- -3'
miRNA:   3'- -UGCUCG---CGCU-CGUGCUC----UCGCGUuag -5'
23840 5' -56.3 NC_005261.1 + 37234 0.66 0.858279
Target:  5'- uGCGcGGCGCG-GCGCGuGgacAGCGCGGa- -3'
miRNA:   3'- -UGC-UCGCGCuCGUGCuC---UCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 120655 0.66 0.842285
Target:  5'- gGCGcaaGGCGCGGGCGCGccuguGAucucGCGCGcgCc -3'
miRNA:   3'- -UGC---UCGCGCUCGUGCu----CU----CGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 98109 0.66 0.850383
Target:  5'- gGCGGGCgGCGAgGCugGGGAcGcCGCGGc- -3'
miRNA:   3'- -UGCUCG-CGCU-CGugCUCU-C-GCGUUag -5'
23840 5' -56.3 NC_005261.1 + 63787 0.66 0.850383
Target:  5'- cACGuGCGCGcgcGGCuGCGuGAGCGUGAa- -3'
miRNA:   3'- -UGCuCGCGC---UCG-UGCuCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 32189 0.66 0.850383
Target:  5'- gGCG-GCGCGcGCugGAGcuGGCGCc--- -3'
miRNA:   3'- -UGCuCGCGCuCGugCUC--UCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 28241 0.66 0.850383
Target:  5'- gGCGcGCGCGAuaGCGGGGGCuGC--UCg -3'
miRNA:   3'- -UGCuCGCGCUcgUGCUCUCG-CGuuAG- -5'
23840 5' -56.3 NC_005261.1 + 132626 0.66 0.850383
Target:  5'- gGCGcuGGCGcCGAGgACGcGGGCGCGGc- -3'
miRNA:   3'- -UGC--UCGC-GCUCgUGCuCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 32381 0.66 0.850383
Target:  5'- uGCaGGCGCG-GCGCGgcggcgucccGGAGCGCGu-- -3'
miRNA:   3'- -UGcUCGCGCuCGUGC----------UCUCGCGUuag -5'
23840 5' -56.3 NC_005261.1 + 105906 0.66 0.842285
Target:  5'- cCGGGCGCGGGC-CGcucGCGCGcgCc -3'
miRNA:   3'- uGCUCGCGCUCGuGCucuCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 62299 0.66 0.842285
Target:  5'- gGCGccGCGCGGGCGCGcGGcGGCcccGCGGUCc -3'
miRNA:   3'- -UGCu-CGCGCUCGUGC-UC-UCG---CGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 15436 0.66 0.842285
Target:  5'- cCGGGCGCGGGCcgGCGAugGAGaagaGCAcgUg -3'
miRNA:   3'- uGCUCGCGCUCG--UGCU--CUCg---CGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 96947 0.66 0.849583
Target:  5'- cACGGGCGCaucggcgGGGCAgcCGccGGGCGCGAUUc -3'
miRNA:   3'- -UGCUCGCG-------CUCGU--GCu-CUCGCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 113329 0.66 0.849583
Target:  5'- cGCGAgaaggucGCGCG-GCACGGGcuguacaacGCGCAGUUc -3'
miRNA:   3'- -UGCU-------CGCGCuCGUGCUCu--------CGCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 48914 0.66 0.858279
Target:  5'- --uAGCGCGAGCcCGGGcgccAGCGCcgcuGUCu -3'
miRNA:   3'- ugcUCGCGCUCGuGCUC----UCGCGu---UAG- -5'
23840 5' -56.3 NC_005261.1 + 110524 0.66 0.842285
Target:  5'- uCGucuGCGgGGcGCAgGAGGGCGCGcgCa -3'
miRNA:   3'- uGCu--CGCgCU-CGUgCUCUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 49571 0.66 0.842285
Target:  5'- cAUGGGCGUGAaCACGGGcucggggcgcgcGGCGCugcuGUCa -3'
miRNA:   3'- -UGCUCGCGCUcGUGCUC------------UCGCGu---UAG- -5'
23840 5' -56.3 NC_005261.1 + 108908 0.66 0.858279
Target:  5'- gGCGAGCG-GGGCGCGgggucGGGGCccaGCAcgCc -3'
miRNA:   3'- -UGCUCGCgCUCGUGC-----UCUCG---CGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 32047 0.66 0.842285
Target:  5'- gACGGGCGCaaggacauGGcCGCGcAGAGCGCGGc- -3'
miRNA:   3'- -UGCUCGCGc-------UC-GUGC-UCUCGCGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.