miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 131462 0.66 0.873438
Target:  5'- cGCGGGCGCcucccGCcuccGCGAGcGCGCcGUCg -3'
miRNA:   3'- -UGCUCGCGcu---CG----UGCUCuCGCGuUAG- -5'
23840 5' -56.3 NC_005261.1 + 63361 0.66 0.880688
Target:  5'- cACGguGGCGCG-GUGCGGGuGUGCcgGGUCg -3'
miRNA:   3'- -UGC--UCGCGCuCGUGCUCuCGCG--UUAG- -5'
23840 5' -56.3 NC_005261.1 + 132626 0.66 0.850383
Target:  5'- gGCGcuGGCGcCGAGgACGcGGGCGCGGc- -3'
miRNA:   3'- -UGC--UCGC-GCUCgUGCuCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 32189 0.66 0.850383
Target:  5'- gGCG-GCGCGcGCugGAGcuGGCGCc--- -3'
miRNA:   3'- -UGCuCGCGCuCGugCUC--UCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 62299 0.66 0.842285
Target:  5'- gGCGccGCGCGGGCGCGcGGcGGCcccGCGGUCc -3'
miRNA:   3'- -UGCu-CGCGCUCGUGC-UC-UCG---CGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 72143 0.66 0.880688
Target:  5'- cCGGGUGCGAcuGCACGuccGGGGUGUccggGAUCc -3'
miRNA:   3'- uGCUCGCGCU--CGUGC---UCUCGCG----UUAG- -5'
23840 5' -56.3 NC_005261.1 + 37234 0.66 0.858279
Target:  5'- uGCGcGGCGCG-GCGCGuGgacAGCGCGGa- -3'
miRNA:   3'- -UGC-UCGCGCuCGUGCuC---UCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 93862 0.66 0.864446
Target:  5'- cACGAgGCGCGcGCACuccuuccagcucAGcAGCGCGGUCg -3'
miRNA:   3'- -UGCU-CGCGCuCGUGc-----------UC-UCGCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 15436 0.66 0.842285
Target:  5'- cCGGGCGCGGGCcgGCGAugGAGaagaGCAcgUg -3'
miRNA:   3'- uGCUCGCGCUCG--UGCU--CUCg---CGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 49469 0.66 0.873438
Target:  5'- gGCGGGCGCGcaggccGCGCGGaAGCuGCAGc- -3'
miRNA:   3'- -UGCUCGCGCu-----CGUGCUcUCG-CGUUag -5'
23840 5' -56.3 NC_005261.1 + 57674 0.66 0.880688
Target:  5'- cGCGAGCGCcagccggcgGGGCAC-AGGGCcaGCAGg- -3'
miRNA:   3'- -UGCUCGCG---------CUCGUGcUCUCG--CGUUag -5'
23840 5' -56.3 NC_005261.1 + 106639 0.66 0.880688
Target:  5'- gACGAGCucgGCGAcgucGCGCucGccGGCGCGGUCg -3'
miRNA:   3'- -UGCUCG---CGCU----CGUGcuC--UCGCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 40057 0.66 0.8727
Target:  5'- gACGGGCccguGCugGAGCACGAGgguccccgcuggcAGCGC-GUCg -3'
miRNA:   3'- -UGCUCG----CG--CUCGUGCUC-------------UCGCGuUAG- -5'
23840 5' -56.3 NC_005261.1 + 55203 0.66 0.876365
Target:  5'- gGCGuAGCGCGgauccggcggcccgaGGCgGCGAGGGCgGCAGc- -3'
miRNA:   3'- -UGC-UCGCGC---------------UCG-UGCUCUCG-CGUUag -5'
23840 5' -56.3 NC_005261.1 + 32047 0.66 0.842285
Target:  5'- gACGGGCGCaaggacauGGcCGCGcAGAGCGCGGc- -3'
miRNA:   3'- -UGCUCGCGc-------UC-GUGC-UCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 96069 0.66 0.880688
Target:  5'- cACGAcGCcCGAGCAgGuGAGUGCGGc- -3'
miRNA:   3'- -UGCU-CGcGCUCGUgCuCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 48914 0.66 0.858279
Target:  5'- --uAGCGCGAGCcCGGGcgccAGCGCcgcuGUCu -3'
miRNA:   3'- ugcUCGCGCUCGuGCUC----UCGCGu---UAG- -5'
23840 5' -56.3 NC_005261.1 + 1729 0.66 0.858279
Target:  5'- cACGGGCaccGCGGuGCGCGGGcccaGGCGCGu-- -3'
miRNA:   3'- -UGCUCG---CGCU-CGUGCUC----UCGCGUuag -5'
23840 5' -56.3 NC_005261.1 + 98109 0.66 0.850383
Target:  5'- gGCGGGCgGCGAgGCugGGGAcGcCGCGGc- -3'
miRNA:   3'- -UGCUCG-CGCU-CGugCUCU-C-GCGUUag -5'
23840 5' -56.3 NC_005261.1 + 120655 0.66 0.842285
Target:  5'- gGCGcaaGGCGCGGGCGCGccuguGAucucGCGCGcgCc -3'
miRNA:   3'- -UGC---UCGCGCUCGUGCu----CU----CGCGUuaG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.