Results 21 - 40 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 131462 | 0.66 | 0.873438 |
Target: 5'- cGCGGGCGCcucccGCcuccGCGAGcGCGCcGUCg -3' miRNA: 3'- -UGCUCGCGcu---CG----UGCUCuCGCGuUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 63361 | 0.66 | 0.880688 |
Target: 5'- cACGguGGCGCG-GUGCGGGuGUGCcgGGUCg -3' miRNA: 3'- -UGC--UCGCGCuCGUGCUCuCGCG--UUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 132626 | 0.66 | 0.850383 |
Target: 5'- gGCGcuGGCGcCGAGgACGcGGGCGCGGc- -3' miRNA: 3'- -UGC--UCGC-GCUCgUGCuCUCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 32189 | 0.66 | 0.850383 |
Target: 5'- gGCG-GCGCGcGCugGAGcuGGCGCc--- -3' miRNA: 3'- -UGCuCGCGCuCGugCUC--UCGCGuuag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 62299 | 0.66 | 0.842285 |
Target: 5'- gGCGccGCGCGGGCGCGcGGcGGCcccGCGGUCc -3' miRNA: 3'- -UGCu-CGCGCUCGUGC-UC-UCG---CGUUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 72143 | 0.66 | 0.880688 |
Target: 5'- cCGGGUGCGAcuGCACGuccGGGGUGUccggGAUCc -3' miRNA: 3'- uGCUCGCGCU--CGUGC---UCUCGCG----UUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 37234 | 0.66 | 0.858279 |
Target: 5'- uGCGcGGCGCG-GCGCGuGgacAGCGCGGa- -3' miRNA: 3'- -UGC-UCGCGCuCGUGCuC---UCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 93862 | 0.66 | 0.864446 |
Target: 5'- cACGAgGCGCGcGCACuccuuccagcucAGcAGCGCGGUCg -3' miRNA: 3'- -UGCU-CGCGCuCGUGc-----------UC-UCGCGUUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 15436 | 0.66 | 0.842285 |
Target: 5'- cCGGGCGCGGGCcgGCGAugGAGaagaGCAcgUg -3' miRNA: 3'- uGCUCGCGCUCG--UGCU--CUCg---CGUuaG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 49469 | 0.66 | 0.873438 |
Target: 5'- gGCGGGCGCGcaggccGCGCGGaAGCuGCAGc- -3' miRNA: 3'- -UGCUCGCGCu-----CGUGCUcUCG-CGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 57674 | 0.66 | 0.880688 |
Target: 5'- cGCGAGCGCcagccggcgGGGCAC-AGGGCcaGCAGg- -3' miRNA: 3'- -UGCUCGCG---------CUCGUGcUCUCG--CGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 106639 | 0.66 | 0.880688 |
Target: 5'- gACGAGCucgGCGAcgucGCGCucGccGGCGCGGUCg -3' miRNA: 3'- -UGCUCG---CGCU----CGUGcuC--UCGCGUUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 40057 | 0.66 | 0.8727 |
Target: 5'- gACGGGCccguGCugGAGCACGAGgguccccgcuggcAGCGC-GUCg -3' miRNA: 3'- -UGCUCG----CG--CUCGUGCUC-------------UCGCGuUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 55203 | 0.66 | 0.876365 |
Target: 5'- gGCGuAGCGCGgauccggcggcccgaGGCgGCGAGGGCgGCAGc- -3' miRNA: 3'- -UGC-UCGCGC---------------UCG-UGCUCUCG-CGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 32047 | 0.66 | 0.842285 |
Target: 5'- gACGGGCGCaaggacauGGcCGCGcAGAGCGCGGc- -3' miRNA: 3'- -UGCUCGCGc-------UC-GUGC-UCUCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 96069 | 0.66 | 0.880688 |
Target: 5'- cACGAcGCcCGAGCAgGuGAGUGCGGc- -3' miRNA: 3'- -UGCU-CGcGCUCGUgCuCUCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 48914 | 0.66 | 0.858279 |
Target: 5'- --uAGCGCGAGCcCGGGcgccAGCGCcgcuGUCu -3' miRNA: 3'- ugcUCGCGCUCGuGCUC----UCGCGu---UAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 1729 | 0.66 | 0.858279 |
Target: 5'- cACGGGCaccGCGGuGCGCGGGcccaGGCGCGu-- -3' miRNA: 3'- -UGCUCG---CGCU-CGUGCUC----UCGCGUuag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 98109 | 0.66 | 0.850383 |
Target: 5'- gGCGGGCgGCGAgGCugGGGAcGcCGCGGc- -3' miRNA: 3'- -UGCUCG-CGCU-CGugCUCU-C-GCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 120655 | 0.66 | 0.842285 |
Target: 5'- gGCGcaaGGCGCGGGCGCGccuguGAucucGCGCGcgCc -3' miRNA: 3'- -UGC---UCGCGCUCGUGCu----CU----CGCGUuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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