Results 21 - 40 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 14883 | 0.72 | 0.537892 |
Target: 5'- cGCG-GCGCaGAGCGCGAGcAGCaGCAGc- -3' miRNA: 3'- -UGCuCGCG-CUCGUGCUC-UCG-CGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 15436 | 0.66 | 0.842285 |
Target: 5'- cCGGGCGCGGGCcgGCGAugGAGaagaGCAcgUg -3' miRNA: 3'- uGCUCGCGCUCG--UGCU--CUCg---CGUuaG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 15551 | 0.77 | 0.310227 |
Target: 5'- cGCGAcGCGCGGGCAgGAGGcgaaCGCGGUCg -3' miRNA: 3'- -UGCU-CGCGCUCGUgCUCUc---GCGUUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 15845 | 0.69 | 0.702094 |
Target: 5'- cGCGAGCGCgcuaGAGgACGAGGucGCgGCAAUg -3' miRNA: 3'- -UGCUCGCG----CUCgUGCUCU--CG-CGUUAg -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 15960 | 0.7 | 0.671409 |
Target: 5'- gGCGAGUgGCGGGCGgGGGAGgGCc--- -3' miRNA: 3'- -UGCUCG-CGCUCGUgCUCUCgCGuuag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 16175 | 0.69 | 0.732237 |
Target: 5'- -gGGGCGCGGGCgugGCGGGGGUggGCGGg- -3' miRNA: 3'- ugCUCGCGCUCG---UGCUCUCG--CGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 17174 | 0.73 | 0.463837 |
Target: 5'- cGCGGGCGUGGGCagcccugccgcggcgGCGAGcAGCGCGc-- -3' miRNA: 3'- -UGCUCGCGCUCG---------------UGCUC-UCGCGUuag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 18345 | 0.7 | 0.649738 |
Target: 5'- -gGGGCGC-AGCACGAGcgacgucccgcuaAGCGCGuaGUCg -3' miRNA: 3'- ugCUCGCGcUCGUGCUC-------------UCGCGU--UAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 18807 | 0.67 | 0.808015 |
Target: 5'- aGCG-GCgGCGGGCAUGAuuGCGCucUCg -3' miRNA: 3'- -UGCuCG-CGCUCGUGCUcuCGCGuuAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 19265 | 0.66 | 0.873438 |
Target: 5'- aGCGcGCGCGGGUACGccAGCGUc-UCg -3' miRNA: 3'- -UGCuCGCGCUCGUGCucUCGCGuuAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 20410 | 0.67 | 0.802636 |
Target: 5'- cACGuGUGCGgauaGGCACGgcgccuucccgggggGGAGCGCAGa- -3' miRNA: 3'- -UGCuCGCGC----UCGUGC---------------UCUCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 21186 | 0.68 | 0.780572 |
Target: 5'- cGCuGGCGCGAGCGCGGccGCGgAcgCu -3' miRNA: 3'- -UGcUCGCGCUCGUGCUcuCGCgUuaG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 21692 | 0.69 | 0.712215 |
Target: 5'- uCGAGCGCGucGCGgGcGAGCGCu-UCa -3' miRNA: 3'- uGCUCGCGCu-CGUgCuCUCGCGuuAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 21827 | 0.66 | 0.880688 |
Target: 5'- gGCGGGCGCGcGUGCGGGcGgGC--UCg -3' miRNA: 3'- -UGCUCGCGCuCGUGCUCuCgCGuuAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 22089 | 0.71 | 0.588764 |
Target: 5'- gGCGccGCGUGGGgGCGGGAGgGCGGUg -3' miRNA: 3'- -UGCu-CGCGCUCgUGCUCUCgCGUUAg -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 23335 | 0.73 | 0.50809 |
Target: 5'- gACGAGCGCGcGGCGC-AGcGCGCGcguGUCg -3' miRNA: 3'- -UGCUCGCGC-UCGUGcUCuCGCGU---UAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 23422 | 0.69 | 0.722265 |
Target: 5'- gGCGAgGCGCu-GCGCGucGGGGCGcCAGUCc -3' miRNA: 3'- -UGCU-CGCGcuCGUGC--UCUCGC-GUUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 23503 | 0.71 | 0.578497 |
Target: 5'- gGCaGGCGCGGGCccUGGGAGCacGCGGUCg -3' miRNA: 3'- -UGcUCGCGCUCGu-GCUCUCG--CGUUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 25286 | 0.66 | 0.880688 |
Target: 5'- -gGGGCGCGgucuguGGC-CGuGAGCGUcGUCg -3' miRNA: 3'- ugCUCGCGC------UCGuGCuCUCGCGuUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 26877 | 0.73 | 0.47901 |
Target: 5'- gGCGGGgGUGGGUggggggggGCGGGGGCGCAGa- -3' miRNA: 3'- -UGCUCgCGCUCG--------UGCUCUCGCGUUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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