miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 56006 0.76 0.355774
Target:  5'- gGCGGGgGCGGGgGCGGGgaAGaCGCAAUCg -3'
miRNA:   3'- -UGCUCgCGCUCgUGCUC--UC-GCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 90202 0.75 0.397182
Target:  5'- -gGAGCGCGGGgGCGgcGGAGCGCccUCg -3'
miRNA:   3'- ugCUCGCGCUCgUGC--UCUCGCGuuAG- -5'
23840 5' -56.3 NC_005261.1 + 42853 0.75 0.397182
Target:  5'- -aGAGUGCGAGCGCGucguguccGAGCGCGc-- -3'
miRNA:   3'- ugCUCGCGCUCGUGCu-------CUCGCGUuag -5'
23840 5' -56.3 NC_005261.1 + 12310 0.74 0.405827
Target:  5'- cACGGGCGCGuAGC-CGGcGGGCGCGcgCu -3'
miRNA:   3'- -UGCUCGCGC-UCGuGCU-CUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 67826 0.74 0.432459
Target:  5'- uCGGGCGCGcGCAgGAGGGcCGCAcUCu -3'
miRNA:   3'- uGCUCGCGCuCGUgCUCUC-GCGUuAG- -5'
23840 5' -56.3 NC_005261.1 + 31576 0.74 0.441561
Target:  5'- gACGGGCGCGccGgACGuGAGCGCGcUCg -3'
miRNA:   3'- -UGCUCGCGCu-CgUGCuCUCGCGUuAG- -5'
23840 5' -56.3 NC_005261.1 + 74945 0.74 0.441561
Target:  5'- uGCG-GCGCGGGCGCGcucGGCGCGcUCg -3'
miRNA:   3'- -UGCuCGCGCUCGUGCuc-UCGCGUuAG- -5'
23840 5' -56.3 NC_005261.1 + 111732 0.74 0.441561
Target:  5'- gACGAGCGCGuGUACGuGAaGUGCGggCa -3'
miRNA:   3'- -UGCUCGCGCuCGUGCuCU-CGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 121651 0.74 0.441561
Target:  5'- gGCGAGCGCGGGCuguccGCGucGGCGUAGg- -3'
miRNA:   3'- -UGCUCGCGCUCG-----UGCucUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 123164 0.74 0.45077
Target:  5'- gGCGGG-GCGGGCGCGcGGGCGUggUg -3'
miRNA:   3'- -UGCUCgCGCUCGUGCuCUCGCGuuAg -5'
23840 5' -56.3 NC_005261.1 + 120931 0.74 0.45077
Target:  5'- cGCGAGCGcCGGGCGCGGGAagguggaggcucGCGCc--- -3'
miRNA:   3'- -UGCUCGC-GCUCGUGCUCU------------CGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 17174 0.73 0.463837
Target:  5'- cGCGGGCGUGGGCagcccugccgcggcgGCGAGcAGCGCGc-- -3'
miRNA:   3'- -UGCUCGCGCUCG---------------UGCUC-UCGCGUuag -5'
23840 5' -56.3 NC_005261.1 + 48322 0.73 0.469498
Target:  5'- uCGGGCcCGGGCuCGGGGGCGCGcgCg -3'
miRNA:   3'- uGCUCGcGCUCGuGCUCUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 133263 0.73 0.469498
Target:  5'- gGCGGcGCGCGAGUACcAGGGCGCc--- -3'
miRNA:   3'- -UGCU-CGCGCUCGUGcUCUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 59059 0.73 0.469498
Target:  5'- aGCGcGCGCGGcCGCgGAGAGCGCGcgCg -3'
miRNA:   3'- -UGCuCGCGCUcGUG-CUCUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 26877 0.73 0.47901
Target:  5'- gGCGGGgGUGGGUggggggggGCGGGGGCGCAGa- -3'
miRNA:   3'- -UGCUCgCGCUCG--------UGCUCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 85409 0.73 0.49831
Target:  5'- cGCGAGCcCGAGCACGcGcGCGCGcgCc -3'
miRNA:   3'- -UGCUCGcGCUCGUGCuCuCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 3896 0.73 0.507108
Target:  5'- gGCGAGCGCG-GCGCGGGcgcccgcgccgccGGCGCc--- -3'
miRNA:   3'- -UGCUCGCGCuCGUGCUC-------------UCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 56044 0.73 0.50809
Target:  5'- gACGcGCGCGAGCGauguuCGGGGGCGCc--- -3'
miRNA:   3'- -UGCuCGCGCUCGU-----GCUCUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 23335 0.73 0.50809
Target:  5'- gACGAGCGCGcGGCGC-AGcGCGCGcguGUCg -3'
miRNA:   3'- -UGCUCGCGC-UCGUGcUCuCGCGU---UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.