miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 72 0.69 0.681682
Target:  5'- gGCGcGCGCGGGgGCGGG-GUGCGGg- -3'
miRNA:   3'- -UGCuCGCGCUCgUGCUCuCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 522 0.71 0.609385
Target:  5'- -aGGGCGCGGGCggGCGGGGG-GCAGg- -3'
miRNA:   3'- ugCUCGCGCUCG--UGCUCUCgCGUUag -5'
23840 5' -56.3 NC_005261.1 + 1729 0.66 0.858279
Target:  5'- cACGGGCaccGCGGuGCGCGGGcccaGGCGCGu-- -3'
miRNA:   3'- -UGCUCG---CGCU-CGUGCUC----UCGCGUuag -5'
23840 5' -56.3 NC_005261.1 + 2131 0.67 0.833991
Target:  5'- cCGAGCGCGcuCACGuccGGCGCGcccGUCc -3'
miRNA:   3'- uGCUCGCGCucGUGCuc-UCGCGU---UAG- -5'
23840 5' -56.3 NC_005261.1 + 2400 0.7 0.654907
Target:  5'- gGCGAGCGCGccCGCGGGccccgcgcggcggcgGGCcGCGAUCu -3'
miRNA:   3'- -UGCUCGCGCucGUGCUC---------------UCG-CGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 2466 0.69 0.712215
Target:  5'- gGCGAGCGcCGGGCGCcAGGGCuCGGg- -3'
miRNA:   3'- -UGCUCGC-GCUCGUGcUCUCGcGUUag -5'
23840 5' -56.3 NC_005261.1 + 2553 0.67 0.808015
Target:  5'- cGCG-GCGCuGGGCGCGGGcGUGUggUa -3'
miRNA:   3'- -UGCuCGCG-CUCGUGCUCuCGCGuuAg -5'
23840 5' -56.3 NC_005261.1 + 3533 0.71 0.619725
Target:  5'- gGCGgccgccucGGCGCGcAGCGCGGcGGGCGCGGc- -3'
miRNA:   3'- -UGC--------UCGCGC-UCGUGCU-CUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 3640 0.72 0.537892
Target:  5'- cCGGGUGCGccgcuAGCGCGucuGGAGCGCAGg- -3'
miRNA:   3'- uGCUCGCGC-----UCGUGC---UCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 3866 0.67 0.833991
Target:  5'- cGCGcGGCcgGCGAGCACG-GcGCGCAGc- -3'
miRNA:   3'- -UGC-UCG--CGCUCGUGCuCuCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 3896 0.73 0.507108
Target:  5'- gGCGAGCGCG-GCGCGGGcgcccgcgccgccGGCGCc--- -3'
miRNA:   3'- -UGCUCGCGCuCGUGCUC-------------UCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 4518 0.71 0.609385
Target:  5'- cGCGcccGCGCGGGCgccgcgGCGAGGGCGCc--- -3'
miRNA:   3'- -UGCu--CGCGCUCG------UGCUCUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 5400 0.68 0.780572
Target:  5'- -aGAGCGaGAGCGCGGGcGcCGCGAa- -3'
miRNA:   3'- ugCUCGCgCUCGUGCUCuC-GCGUUag -5'
23840 5' -56.3 NC_005261.1 + 11470 0.69 0.691913
Target:  5'- aGCGGGCGCGgaggGGCgggGCGGGGGUGCc--- -3'
miRNA:   3'- -UGCUCGCGC----UCG---UGCUCUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 11845 0.72 0.527886
Target:  5'- cGCGGGCGCGcGUuCGcGAGCGCGAg- -3'
miRNA:   3'- -UGCUCGCGCuCGuGCuCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 12310 0.74 0.405827
Target:  5'- cACGGGCGCGuAGC-CGGcGGGCGCGcgCu -3'
miRNA:   3'- -UGCUCGCGC-UCGuGCU-CUCGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 13036 0.68 0.742119
Target:  5'- cACGAGC-CaGGGCGCGGGGccGCGCGcgCc -3'
miRNA:   3'- -UGCUCGcG-CUCGUGCUCU--CGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 13093 0.7 0.661103
Target:  5'- gGCGGGCgGCGGGCucggcuCGGGGGCGUc--- -3'
miRNA:   3'- -UGCUCG-CGCUCGu-----GCUCUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 13670 0.7 0.671409
Target:  5'- cGCGGGgG-GGGCGCGGGGcGCGCGggCg -3'
miRNA:   3'- -UGCUCgCgCUCGUGCUCU-CGCGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 14115 0.67 0.816848
Target:  5'- gACGGGCGUcGGCuCGGGcgguGgGCAGUCg -3'
miRNA:   3'- -UGCUCGCGcUCGuGCUCu---CgCGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.