Results 1 - 20 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23840 | 5' | -56.3 | NC_005261.1 | + | 138193 | 0.71 | 0.609385 |
Target: 5'- -aGGGCGCGGGCggGCGGGGG-GCAGg- -3' miRNA: 3'- ugCUCGCGCUCG--UGCUCUCgCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 137755 | 0.69 | 0.681682 |
Target: 5'- gGCGcGCGCGGGgGCGGG-GUGCGGg- -3' miRNA: 3'- -UGCuCGCGCUCgUGCUCuCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 137067 | 0.69 | 0.732237 |
Target: 5'- cGCGgaGGCGCGGGCACccauGGcGGCGCAGg- -3' miRNA: 3'- -UGC--UCGCGCUCGUGc---UC-UCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 136614 | 0.68 | 0.761581 |
Target: 5'- aGCGGcGCGCGcGCGcCGAGGGCgGCGGg- -3' miRNA: 3'- -UGCU-CGCGCuCGU-GCUCUCG-CGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 136575 | 0.69 | 0.722265 |
Target: 5'- cGCGGGUggGCGGGCGCaGAGAcgcccgGCGCAGc- -3' miRNA: 3'- -UGCUCG--CGCUCGUG-CUCU------CGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 135656 | 0.69 | 0.691913 |
Target: 5'- cGCGGGCGCGGGCGgcccucgcuCGAGGagcucugcgccGCGCGGc- -3' miRNA: 3'- -UGCUCGCGCUCGU---------GCUCU-----------CGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 135451 | 0.67 | 0.799018 |
Target: 5'- gGCG-GCGCGGGCgcuGCGGGAccucguacuGCGCGGc- -3' miRNA: 3'- -UGCuCGCGCUCG---UGCUCU---------CGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 134945 | 0.7 | 0.671409 |
Target: 5'- gACGAGC-CGAuGgGCGAGGGCGCc--- -3' miRNA: 3'- -UGCUCGcGCU-CgUGCUCUCGCGuuag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 134910 | 0.68 | 0.789868 |
Target: 5'- aGCGGGUGCGcaagcgcaAGCugGAGAcCGCGGa- -3' miRNA: 3'- -UGCUCGCGC--------UCGugCUCUcGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 134768 | 0.69 | 0.732237 |
Target: 5'- gGCGgcauGGCG-GAcCACGAGAGCGCGAcccUCa -3' miRNA: 3'- -UGC----UCGCgCUcGUGCUCUCGCGUU---AG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 134374 | 0.7 | 0.650773 |
Target: 5'- gGCG-GCGCcgcuGGCgacgGCGAGAGCGgGAUCa -3' miRNA: 3'- -UGCuCGCGc---UCG----UGCUCUCGCgUUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 133263 | 0.73 | 0.469498 |
Target: 5'- gGCGGcGCGCGAGUACcAGGGCGCc--- -3' miRNA: 3'- -UGCU-CGCGCUCGUGcUCUCGCGuuag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 133063 | 0.67 | 0.833991 |
Target: 5'- gGCGuuGGCgGCGAGUACGucagcuucuucGAGCGCAAg- -3' miRNA: 3'- -UGC--UCG-CGCUCGUGCu----------CUCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 132626 | 0.66 | 0.850383 |
Target: 5'- gGCGcuGGCGcCGAGgACGcGGGCGCGGc- -3' miRNA: 3'- -UGC--UCGC-GCUCgUGCuCUCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 132533 | 0.77 | 0.303082 |
Target: 5'- uACGAGCGCGcccucgcGCGCGAGggcgaGGCGCAGUa -3' miRNA: 3'- -UGCUCGCGCu------CGUGCUC-----UCGCGUUAg -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 131918 | 0.67 | 0.833991 |
Target: 5'- gACGGGCuuuuugGCGcGCGCGGGAcCGCGGUg -3' miRNA: 3'- -UGCUCG------CGCuCGUGCUCUcGCGUUAg -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 131649 | 0.66 | 0.842285 |
Target: 5'- gACGGGCccccCGGGCgcaccgucuGCGAGGGUGCGAc- -3' miRNA: 3'- -UGCUCGc---GCUCG---------UGCUCUCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 131462 | 0.66 | 0.873438 |
Target: 5'- cGCGGGCGCcucccGCcuccGCGAGcGCGCcGUCg -3' miRNA: 3'- -UGCUCGCGcu---CG----UGCUCuCGCGuUAG- -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 128456 | 0.77 | 0.310227 |
Target: 5'- gGCGGuCGCGAGCACGAcgagcagcGAGCGCGAc- -3' miRNA: 3'- -UGCUcGCGCUCGUGCU--------CUCGCGUUag -5' |
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23840 | 5' | -56.3 | NC_005261.1 | + | 128079 | 0.69 | 0.681682 |
Target: 5'- gGCGGGCgaGCGAGCggguuaacggGCGAGcGGCGCGGc- -3' miRNA: 3'- -UGCUCG--CGCUCG----------UGCUC-UCGCGUUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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