miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 138193 0.71 0.609385
Target:  5'- -aGGGCGCGGGCggGCGGGGG-GCAGg- -3'
miRNA:   3'- ugCUCGCGCUCG--UGCUCUCgCGUUag -5'
23840 5' -56.3 NC_005261.1 + 137755 0.69 0.681682
Target:  5'- gGCGcGCGCGGGgGCGGG-GUGCGGg- -3'
miRNA:   3'- -UGCuCGCGCUCgUGCUCuCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 137067 0.69 0.732237
Target:  5'- cGCGgaGGCGCGGGCACccauGGcGGCGCAGg- -3'
miRNA:   3'- -UGC--UCGCGCUCGUGc---UC-UCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 136614 0.68 0.761581
Target:  5'- aGCGGcGCGCGcGCGcCGAGGGCgGCGGg- -3'
miRNA:   3'- -UGCU-CGCGCuCGU-GCUCUCG-CGUUag -5'
23840 5' -56.3 NC_005261.1 + 136575 0.69 0.722265
Target:  5'- cGCGGGUggGCGGGCGCaGAGAcgcccgGCGCAGc- -3'
miRNA:   3'- -UGCUCG--CGCUCGUG-CUCU------CGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 135656 0.69 0.691913
Target:  5'- cGCGGGCGCGGGCGgcccucgcuCGAGGagcucugcgccGCGCGGc- -3'
miRNA:   3'- -UGCUCGCGCUCGU---------GCUCU-----------CGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 135451 0.67 0.799018
Target:  5'- gGCG-GCGCGGGCgcuGCGGGAccucguacuGCGCGGc- -3'
miRNA:   3'- -UGCuCGCGCUCG---UGCUCU---------CGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 134945 0.7 0.671409
Target:  5'- gACGAGC-CGAuGgGCGAGGGCGCc--- -3'
miRNA:   3'- -UGCUCGcGCU-CgUGCUCUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 134910 0.68 0.789868
Target:  5'- aGCGGGUGCGcaagcgcaAGCugGAGAcCGCGGa- -3'
miRNA:   3'- -UGCUCGCGC--------UCGugCUCUcGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 134768 0.69 0.732237
Target:  5'- gGCGgcauGGCG-GAcCACGAGAGCGCGAcccUCa -3'
miRNA:   3'- -UGC----UCGCgCUcGUGCUCUCGCGUU---AG- -5'
23840 5' -56.3 NC_005261.1 + 134374 0.7 0.650773
Target:  5'- gGCG-GCGCcgcuGGCgacgGCGAGAGCGgGAUCa -3'
miRNA:   3'- -UGCuCGCGc---UCG----UGCUCUCGCgUUAG- -5'
23840 5' -56.3 NC_005261.1 + 133263 0.73 0.469498
Target:  5'- gGCGGcGCGCGAGUACcAGGGCGCc--- -3'
miRNA:   3'- -UGCU-CGCGCUCGUGcUCUCGCGuuag -5'
23840 5' -56.3 NC_005261.1 + 133063 0.67 0.833991
Target:  5'- gGCGuuGGCgGCGAGUACGucagcuucuucGAGCGCAAg- -3'
miRNA:   3'- -UGC--UCG-CGCUCGUGCu----------CUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 132626 0.66 0.850383
Target:  5'- gGCGcuGGCGcCGAGgACGcGGGCGCGGc- -3'
miRNA:   3'- -UGC--UCGC-GCUCgUGCuCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 132533 0.77 0.303082
Target:  5'- uACGAGCGCGcccucgcGCGCGAGggcgaGGCGCAGUa -3'
miRNA:   3'- -UGCUCGCGCu------CGUGCUC-----UCGCGUUAg -5'
23840 5' -56.3 NC_005261.1 + 131918 0.67 0.833991
Target:  5'- gACGGGCuuuuugGCGcGCGCGGGAcCGCGGUg -3'
miRNA:   3'- -UGCUCG------CGCuCGUGCUCUcGCGUUAg -5'
23840 5' -56.3 NC_005261.1 + 131649 0.66 0.842285
Target:  5'- gACGGGCccccCGGGCgcaccgucuGCGAGGGUGCGAc- -3'
miRNA:   3'- -UGCUCGc---GCUCG---------UGCUCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 131462 0.66 0.873438
Target:  5'- cGCGGGCGCcucccGCcuccGCGAGcGCGCcGUCg -3'
miRNA:   3'- -UGCUCGCGcu---CG----UGCUCuCGCGuUAG- -5'
23840 5' -56.3 NC_005261.1 + 128456 0.77 0.310227
Target:  5'- gGCGGuCGCGAGCACGAcgagcagcGAGCGCGAc- -3'
miRNA:   3'- -UGCUcGCGCUCGUGCU--------CUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 128079 0.69 0.681682
Target:  5'- gGCGGGCgaGCGAGCggguuaacggGCGAGcGGCGCGGc- -3'
miRNA:   3'- -UGCUCG--CGCUCG----------UGCUC-UCGCGUUag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.