miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23840 5' -56.3 NC_005261.1 + 14883 0.72 0.537892
Target:  5'- cGCG-GCGCaGAGCGCGAGcAGCaGCAGc- -3'
miRNA:   3'- -UGCuCGCG-CUCGUGCUC-UCG-CGUUag -5'
23840 5' -56.3 NC_005261.1 + 15436 0.66 0.842285
Target:  5'- cCGGGCGCGGGCcgGCGAugGAGaagaGCAcgUg -3'
miRNA:   3'- uGCUCGCGCUCG--UGCU--CUCg---CGUuaG- -5'
23840 5' -56.3 NC_005261.1 + 15551 0.77 0.310227
Target:  5'- cGCGAcGCGCGGGCAgGAGGcgaaCGCGGUCg -3'
miRNA:   3'- -UGCU-CGCGCUCGUgCUCUc---GCGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 15845 0.69 0.702094
Target:  5'- cGCGAGCGCgcuaGAGgACGAGGucGCgGCAAUg -3'
miRNA:   3'- -UGCUCGCG----CUCgUGCUCU--CG-CGUUAg -5'
23840 5' -56.3 NC_005261.1 + 15960 0.7 0.671409
Target:  5'- gGCGAGUgGCGGGCGgGGGAGgGCc--- -3'
miRNA:   3'- -UGCUCG-CGCUCGUgCUCUCgCGuuag -5'
23840 5' -56.3 NC_005261.1 + 16175 0.69 0.732237
Target:  5'- -gGGGCGCGGGCgugGCGGGGGUggGCGGg- -3'
miRNA:   3'- ugCUCGCGCUCG---UGCUCUCG--CGUUag -5'
23840 5' -56.3 NC_005261.1 + 17174 0.73 0.463837
Target:  5'- cGCGGGCGUGGGCagcccugccgcggcgGCGAGcAGCGCGc-- -3'
miRNA:   3'- -UGCUCGCGCUCG---------------UGCUC-UCGCGUuag -5'
23840 5' -56.3 NC_005261.1 + 18345 0.7 0.649738
Target:  5'- -gGGGCGC-AGCACGAGcgacgucccgcuaAGCGCGuaGUCg -3'
miRNA:   3'- ugCUCGCGcUCGUGCUC-------------UCGCGU--UAG- -5'
23840 5' -56.3 NC_005261.1 + 18807 0.67 0.808015
Target:  5'- aGCG-GCgGCGGGCAUGAuuGCGCucUCg -3'
miRNA:   3'- -UGCuCG-CGCUCGUGCUcuCGCGuuAG- -5'
23840 5' -56.3 NC_005261.1 + 19265 0.66 0.873438
Target:  5'- aGCGcGCGCGGGUACGccAGCGUc-UCg -3'
miRNA:   3'- -UGCuCGCGCUCGUGCucUCGCGuuAG- -5'
23840 5' -56.3 NC_005261.1 + 20410 0.67 0.802636
Target:  5'- cACGuGUGCGgauaGGCACGgcgccuucccgggggGGAGCGCAGa- -3'
miRNA:   3'- -UGCuCGCGC----UCGUGC---------------UCUCGCGUUag -5'
23840 5' -56.3 NC_005261.1 + 21186 0.68 0.780572
Target:  5'- cGCuGGCGCGAGCGCGGccGCGgAcgCu -3'
miRNA:   3'- -UGcUCGCGCUCGUGCUcuCGCgUuaG- -5'
23840 5' -56.3 NC_005261.1 + 21692 0.69 0.712215
Target:  5'- uCGAGCGCGucGCGgGcGAGCGCu-UCa -3'
miRNA:   3'- uGCUCGCGCu-CGUgCuCUCGCGuuAG- -5'
23840 5' -56.3 NC_005261.1 + 21827 0.66 0.880688
Target:  5'- gGCGGGCGCGcGUGCGGGcGgGC--UCg -3'
miRNA:   3'- -UGCUCGCGCuCGUGCUCuCgCGuuAG- -5'
23840 5' -56.3 NC_005261.1 + 22089 0.71 0.588764
Target:  5'- gGCGccGCGUGGGgGCGGGAGgGCGGUg -3'
miRNA:   3'- -UGCu-CGCGCUCgUGCUCUCgCGUUAg -5'
23840 5' -56.3 NC_005261.1 + 23335 0.73 0.50809
Target:  5'- gACGAGCGCGcGGCGC-AGcGCGCGcguGUCg -3'
miRNA:   3'- -UGCUCGCGC-UCGUGcUCuCGCGU---UAG- -5'
23840 5' -56.3 NC_005261.1 + 23422 0.69 0.722265
Target:  5'- gGCGAgGCGCu-GCGCGucGGGGCGcCAGUCc -3'
miRNA:   3'- -UGCU-CGCGcuCGUGC--UCUCGC-GUUAG- -5'
23840 5' -56.3 NC_005261.1 + 23503 0.71 0.578497
Target:  5'- gGCaGGCGCGGGCccUGGGAGCacGCGGUCg -3'
miRNA:   3'- -UGcUCGCGCUCGu-GCUCUCG--CGUUAG- -5'
23840 5' -56.3 NC_005261.1 + 25286 0.66 0.880688
Target:  5'- -gGGGCGCGgucuguGGC-CGuGAGCGUcGUCg -3'
miRNA:   3'- ugCUCGCGC------UCGuGCuCUCGCGuUAG- -5'
23840 5' -56.3 NC_005261.1 + 26877 0.73 0.47901
Target:  5'- gGCGGGgGUGGGUggggggggGCGGGGGCGCAGa- -3'
miRNA:   3'- -UGCUCgCGCUCG--------UGCUCUCGCGUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.