miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23841 5' -55.9 NC_005261.1 + 120601 0.66 0.902127
Target:  5'- -uCGcCUGCggCCUcggcgccgugGGGCUccugcuggugGCGGCCCu -3'
miRNA:   3'- auGCaGAUGaaGGA----------CCCGA----------UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 109888 0.66 0.902127
Target:  5'- gGCGg--GCgccCCgGGGCUACaGCCCc -3'
miRNA:   3'- aUGCagaUGaa-GGaCCCGAUGcCGGG- -5'
23841 5' -55.9 NC_005261.1 + 77683 0.66 0.902127
Target:  5'- cGCGg--ACgggCC-GGGCUacgACGGCCCc -3'
miRNA:   3'- aUGCagaUGaa-GGaCCCGA---UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 23481 0.66 0.895612
Target:  5'- gGCGagUGCgcgggcccgCCUGGGCaggcGCGgGCCCu -3'
miRNA:   3'- aUGCagAUGaa-------GGACCCGa---UGC-CGGG- -5'
23841 5' -55.9 NC_005261.1 + 133351 0.66 0.893611
Target:  5'- cGCGgcgCUGCcgCgCaGGGCUucggcugccugcgcGCGGCCCa -3'
miRNA:   3'- aUGCa--GAUGaaG-GaCCCGA--------------UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 118172 0.66 0.888862
Target:  5'- gGCGgg-GCUUgccgUCUGGGCcGCGGgCCCc -3'
miRNA:   3'- aUGCagaUGAA----GGACCCGaUGCC-GGG- -5'
23841 5' -55.9 NC_005261.1 + 39785 0.66 0.88188
Target:  5'- gACGUCg----CCgggGGGCggcGCGGCCg -3'
miRNA:   3'- aUGCAGaugaaGGa--CCCGa--UGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 19937 0.66 0.874673
Target:  5'- -uCG-CUAgcgUCCUGGGCgggggugggGCGGCCUc -3'
miRNA:   3'- auGCaGAUga-AGGACCCGa--------UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 110244 0.66 0.867243
Target:  5'- gGCGgcgCgGCgcCCgggGGGCUGCGGgCCu -3'
miRNA:   3'- aUGCa--GaUGaaGGa--CCCGAUGCCgGG- -5'
23841 5' -55.9 NC_005261.1 + 13924 0.66 0.867243
Target:  5'- cGCGaUCUGCacCCcGGucgcGUUGCGGCCCa -3'
miRNA:   3'- aUGC-AGAUGaaGGaCC----CGAUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 95795 0.66 0.867243
Target:  5'- cGCG-CUGCUagccggcgCCggcggGGGCUcGCGGUCCu -3'
miRNA:   3'- aUGCaGAUGAa-------GGa----CCCGA-UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 123896 0.67 0.859598
Target:  5'- cGCGgaagGCcgCCgcugUGGGgUGCGGCCCg -3'
miRNA:   3'- aUGCaga-UGaaGG----ACCCgAUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 118984 0.67 0.859598
Target:  5'- cGCGcUgUGCUUCUgcgucgGGGcCUGCugGGCCCg -3'
miRNA:   3'- aUGC-AgAUGAAGGa-----CCC-GAUG--CCGGG- -5'
23841 5' -55.9 NC_005261.1 + 83807 0.67 0.858044
Target:  5'- gUACGUCUGCaccugcccgaagaUgggagcaUCCgcuggcGGGCcGCGGCCCc -3'
miRNA:   3'- -AUGCAGAUG-------------A-------AGGa-----CCCGaUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 117912 0.67 0.85491
Target:  5'- aGCGgCUGCgcgggaacgaaggCC--GGCUGCGGCCCg -3'
miRNA:   3'- aUGCaGAUGaa-----------GGacCCGAUGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 118343 0.67 0.85491
Target:  5'- cUGCGggCUGCUccucggCCUcucggccgggcgcugGGGCgcGCGGCCCg -3'
miRNA:   3'- -AUGCa-GAUGAa-----GGA---------------CCCGa-UGCCGGG- -5'
23841 5' -55.9 NC_005261.1 + 103723 0.67 0.851743
Target:  5'- gGCGUCUAgcucCUUCUU-GGCgGCGGCgCCc -3'
miRNA:   3'- aUGCAGAU----GAAGGAcCCGaUGCCG-GG- -5'
23841 5' -55.9 NC_005261.1 + 75972 0.67 0.843684
Target:  5'- cACGcagCU-CUUCCcGGGC-GCGGCCg -3'
miRNA:   3'- aUGCa--GAuGAAGGaCCCGaUGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 62026 0.67 0.843684
Target:  5'- -cCGUCUGCcgUCCUcccGcGGCU-CGGCCg -3'
miRNA:   3'- auGCAGAUGa-AGGA---C-CCGAuGCCGGg -5'
23841 5' -55.9 NC_005261.1 + 135063 0.67 0.835429
Target:  5'- aGCGgcccgCcGCuUUCCggcggcGGGCUcGCGGCCCg -3'
miRNA:   3'- aUGCa----GaUG-AAGGa-----CCCGA-UGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.