miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23842 3' -64.4 NC_005261.1 + 44950 0.65 0.569799
Target:  5'- cGCUGGagagccuGCUGcGGGA-CGcGCGCgagGGCCCg -3'
miRNA:   3'- -CGACC-------UGGCcCCCUaGC-CGCG---CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 22665 0.66 0.565057
Target:  5'- cGCcugGGcggcgcccgagugccGCCGGGGGAcgggccCGGCGacgaGGCCg -3'
miRNA:   3'- -CGa--CC---------------UGGCCCCCUa-----GCCGCg---CCGGg -5'
23842 3' -64.4 NC_005261.1 + 40674 0.66 0.56127
Target:  5'- cGCgacGCCGucGGGGAgcCGGCGCcGGCCg -3'
miRNA:   3'- -CGaccUGGC--CCCCUa-GCCGCG-CCGGg -5'
23842 3' -64.4 NC_005261.1 + 98913 0.66 0.56127
Target:  5'- aGCgGG-UCGGcGGGGUCGGCuGCGGg-- -3'
miRNA:   3'- -CGaCCuGGCC-CCCUAGCCG-CGCCggg -5'
23842 3' -64.4 NC_005261.1 + 22778 0.66 0.56127
Target:  5'- gGC-GGGCCccgcgagaaGGGGGUUGuCGCGGCCg -3'
miRNA:   3'- -CGaCCUGGc--------CCCCUAGCcGCGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 128887 0.66 0.560325
Target:  5'- gGCggGGGCCGGGuGGGaggCGG-GCGucgaaguGCCCu -3'
miRNA:   3'- -CGa-CCUGGCCC-CCUa--GCCgCGC-------CGGG- -5'
23842 3' -64.4 NC_005261.1 + 2676 0.66 0.550895
Target:  5'- cGCUGGGgacCCGGcGGcgcgccggcuuuuGGcCGGCGCcgGGCCCc -3'
miRNA:   3'- -CGACCU---GGCC-CC-------------CUaGCCGCG--CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 28533 0.66 0.549015
Target:  5'- --gGGGCCcGGaGGAggacccggcccugcUCGaCGCGGCCCg -3'
miRNA:   3'- cgaCCUGGcCC-CCU--------------AGCcGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 59412 0.66 0.54245
Target:  5'- cGCcGGcGCCGGcGcuGUC-GCGCGGCCCg -3'
miRNA:   3'- -CGaCC-UGGCC-CccUAGcCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 32143 0.66 0.54245
Target:  5'- ----cGCUGGGGGcUCGGCgcgccgcuGCGGCCg -3'
miRNA:   3'- cgaccUGGCCCCCuAGCCG--------CGCCGGg -5'
23842 3' -64.4 NC_005261.1 + 38936 0.66 0.54245
Target:  5'- aGCcgGcGGCCGGGcGGGccgCGGCGCgcgGGCUg -3'
miRNA:   3'- -CGa-C-CUGGCCC-CCUa--GCCGCG---CCGGg -5'
23842 3' -64.4 NC_005261.1 + 90732 0.66 0.54245
Target:  5'- cGCUGGGCCGcgccuGaGGcgCuGGCGCGGgacuucCCCg -3'
miRNA:   3'- -CGACCUGGCc----C-CCuaG-CCGCGCC------GGG- -5'
23842 3' -64.4 NC_005261.1 + 77442 0.66 0.54245
Target:  5'- aGCUGGucgucagccagGCCcGGGGcgCGGCuGCaGCCg -3'
miRNA:   3'- -CGACC-----------UGGcCCCCuaGCCG-CGcCGGg -5'
23842 3' -64.4 NC_005261.1 + 24299 0.66 0.54245
Target:  5'- --gGGGCCaggaugaggguGGGGGGg-GGgGCaGGCCCa -3'
miRNA:   3'- cgaCCUGG-----------CCCCCUagCCgCG-CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 118914 0.66 0.54245
Target:  5'- uCUGGGuCCGGcgccgcGGGcgCGGCGCcgcgcggcuGGCCg -3'
miRNA:   3'- cGACCU-GGCC------CCCuaGCCGCG---------CCGGg -5'
23842 3' -64.4 NC_005261.1 + 57192 0.66 0.533117
Target:  5'- gGCgGGAaggGGGGGGggGGCGCgcgGGUCCc -3'
miRNA:   3'- -CGaCCUgg-CCCCCUagCCGCG---CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 30703 0.66 0.533117
Target:  5'- gGgaGGcCCGcGGGAgcccCGGCGCcgggccgccaGGCCCg -3'
miRNA:   3'- -CgaCCuGGCcCCCUa---GCCGCG----------CCGGG- -5'
23842 3' -64.4 NC_005261.1 + 74875 0.66 0.532187
Target:  5'- gGC-GGACgCGGcGGcGG-CGGCggagucgGCGGCCCg -3'
miRNA:   3'- -CGaCCUG-GCC-CC-CUaGCCG-------CGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 30094 0.66 0.523843
Target:  5'- --cGGAgcgcgugcuCCGGGcagcuGAgcugcUUGGCGCGGCCCg -3'
miRNA:   3'- cgaCCU---------GGCCCc----CU-----AGCCGCGCCGGG- -5'
23842 3' -64.4 NC_005261.1 + 128793 0.66 0.523843
Target:  5'- uCUGGGcgcCCGGGcccgCGGCGgGGCUCg -3'
miRNA:   3'- cGACCU---GGCCCccuaGCCGCgCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.