Results 21 - 40 of 737 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23844 | 3' | -60.9 | NC_005261.1 | + | 2290 | 0.67 | 0.64916 |
Target: 5'- gCCGCcAGcGCCuCC-CCGGGCaGCGGg -3' miRNA: 3'- gGGCGuUC-CGGuGGcGGCUUGcCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2349 | 0.76 | 0.214608 |
Target: 5'- gUCCGCGaucugcgacauccAGGCCacgcGCCGCCGcAGCGGCGc -3' miRNA: 3'- -GGGCGU-------------UCCGG----UGGCGGC-UUGCCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2409 | 0.8 | 0.120017 |
Target: 5'- gCCCGC-GGGCC-CCGCgCG-GCGGCGGg -3' miRNA: 3'- -GGGCGuUCCGGuGGCG-GCuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2434 | 0.67 | 0.665768 |
Target: 5'- gCCGCGAucucGGCCAgCGCCucggggucgaaggcGAGCGcCGGg -3' miRNA: 3'- gGGCGUU----CCGGUgGCGG--------------CUUGCcGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2542 | 0.68 | 0.600235 |
Target: 5'- gCCGCcAGcGCCGCggCGCUGGGC-GCGGg -3' miRNA: 3'- gGGCGuUC-CGGUG--GCGGCUUGcCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2582 | 0.74 | 0.296453 |
Target: 5'- cCCCGgGcGGCacgcggcggaaGCCGCCGucgGCGGCGGg -3' miRNA: 3'- -GGGCgUuCCGg----------UGGCGGCu--UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2707 | 0.7 | 0.465581 |
Target: 5'- gCCgGCGccGGGCCccugGCCccgGCCGAcuugcgcuugcgccGCGGCGGg -3' miRNA: 3'- -GGgCGU--UCCGG----UGG---CGGCU--------------UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2778 | 0.8 | 0.120017 |
Target: 5'- gCCCGCccccgaGGGGCUGCCGCCG-GCGGcCGGg -3' miRNA: 3'- -GGGCG------UUCCGGUGGCGGCuUGCC-GCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 2928 | 0.66 | 0.735791 |
Target: 5'- cCCCaGCAccuCCACCGCC--GCGGcCGGg -3' miRNA: 3'- -GGG-CGUuccGGUGGCGGcuUGCC-GCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 3151 | 0.77 | 0.195672 |
Target: 5'- cCCCGUccGAGGCC-CCGgCG-GCGGCGGc -3' miRNA: 3'- -GGGCG--UUCCGGuGGCgGCuUGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 3375 | 0.73 | 0.343138 |
Target: 5'- gCCGCGAgcgcGGCCGCCaGCCGcgccggcacuuccgcCGGCGGg -3' miRNA: 3'- gGGCGUU----CCGGUGG-CGGCuu-------------GCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 3427 | 0.66 | 0.697768 |
Target: 5'- -gCGCGcGGGCCAgCGUccaggCGGGCGcGCGGg -3' miRNA: 3'- ggGCGU-UCCGGUgGCG-----GCUUGC-CGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 3507 | 0.72 | 0.399768 |
Target: 5'- gCCGCcAGcGCgGCCGCCuccagcGCGGCGGc -3' miRNA: 3'- gGGCGuUC-CGgUGGCGGcu----UGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 3666 | 0.69 | 0.55184 |
Target: 5'- -gCGC-AGGCCGCgGCCGGcagGCcGCGGc -3' miRNA: 3'- ggGCGuUCCGGUGgCGGCU---UGcCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 3711 | 0.72 | 0.368006 |
Target: 5'- aCCGgGAGcucagacgcGCCGCUGCCGGAcgcgcCGGCGGc -3' miRNA: 3'- gGGCgUUC---------CGGUGGCGGCUU-----GCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 3847 | 0.67 | 0.678421 |
Target: 5'- gCgGCAgcGGcGCCGgCGCCGcGCGGcCGGc -3' miRNA: 3'- gGgCGU--UC-CGGUgGCGGCuUGCC-GCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 3914 | 0.68 | 0.574955 |
Target: 5'- gCCCGCGccGCCGgCGCCGgccuccggguaggccAugGGCGc -3' miRNA: 3'- -GGGCGUucCGGUgGCGGC---------------UugCCGCc -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 4058 | 0.68 | 0.600235 |
Target: 5'- uUCUGCGcGGCCAUgGCgucccCGAcCGGCGGc -3' miRNA: 3'- -GGGCGUuCCGGUGgCG-----GCUuGCCGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 4303 | 0.74 | 0.289923 |
Target: 5'- cCCCGC--GGCCGCCGCguAGCGcGCGGc -3' miRNA: 3'- -GGGCGuuCCGGUGGCGgcUUGC-CGCC- -5' |
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23844 | 3' | -60.9 | NC_005261.1 | + | 4375 | 0.79 | 0.145963 |
Target: 5'- gCCCGCGccgccgaAGcGCaCGCgGCCGGGCGGCGGc -3' miRNA: 3'- -GGGCGU-------UC-CG-GUGgCGGCUUGCCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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