miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23844 5' -51.1 NC_005261.1 + 69234 0.66 0.989624
Target:  5'- cGCUggggCGGUUcGCCGAGGcgcUGGCCC-GCg -3'
miRNA:   3'- -CGG----GUCAAaCGGUUCCu--AUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 65337 0.66 0.986567
Target:  5'- gGCaCCGGgaugUUGCCGuugaugacgcgGGGcAUGGCCC-GCa -3'
miRNA:   3'- -CG-GGUCa---AACGGU-----------UCC-UAUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 63132 0.67 0.980742
Target:  5'- cCCCGGU--GCCGGGGGgcuGCUugaaCUGCa -3'
miRNA:   3'- cGGGUCAaaCGGUUCCUau-UGG----GACG- -5'
23844 5' -51.1 NC_005261.1 + 56385 0.66 0.988771
Target:  5'- uCCCAGgagcucgcggggGCCcuGGGc-GCCCUGCg -3'
miRNA:   3'- cGGGUCaaa---------CGGuuCCUauUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 48898 0.66 0.982861
Target:  5'- aGCCgCAGUUgGCCucuAGcGcgAGCCCggGCg -3'
miRNA:   3'- -CGG-GUCAAaCGGu--UC-CuaUUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 47244 0.69 0.927799
Target:  5'- cCCCAGaaaGCCGAGGA----CCUGCg -3'
miRNA:   3'- cGGGUCaaaCGGUUCCUauugGGACG- -5'
23844 5' -51.1 NC_005261.1 + 44925 0.73 0.799596
Target:  5'- gGCCCAGcc-GCCGAGGAgaguucggcgcuggaGAgCCUGCu -3'
miRNA:   3'- -CGGGUCaaaCGGUUCCUa--------------UUgGGACG- -5'
23844 5' -51.1 NC_005261.1 + 44617 0.66 0.9848
Target:  5'- cGCaCCAGgaggcgUGCaggucgGAGGAggAGCUCUGCg -3'
miRNA:   3'- -CG-GGUCaa----ACGg-----UUCCUa-UUGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 43404 0.67 0.970278
Target:  5'- cGUCCAGgc-GCCGGGGGcGGCCUccGCc -3'
miRNA:   3'- -CGGGUCaaaCGGUUCCUaUUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 39368 0.69 0.947801
Target:  5'- cGCCUcaucGGcg-GCCGGGGAgggcGGCCCUGg -3'
miRNA:   3'- -CGGG----UCaaaCGGUUCCUa---UUGGGACg -5'
23844 5' -51.1 NC_005261.1 + 36890 0.69 0.947801
Target:  5'- cGCCCuuccucGCCAAGGcgcGACCCcGCg -3'
miRNA:   3'- -CGGGucaaa-CGGUUCCua-UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 36825 0.66 0.989486
Target:  5'- cCCCGGUaugcggUGCCGgcgcccgGGGGcUAGCCC-GCg -3'
miRNA:   3'- cGGGUCAa-----ACGGU-------UCCU-AUUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 35936 0.67 0.980742
Target:  5'- aGCCCAGcgggcGCCcAGGcccgAGCCCgGCc -3'
miRNA:   3'- -CGGGUCaaa--CGGuUCCua--UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 35700 0.69 0.927799
Target:  5'- cCCCGGUggGCCGGGGGcucgguggcGGCCCcgGCc -3'
miRNA:   3'- cGGGUCAaaCGGUUCCUa--------UUGGGa-CG- -5'
23844 5' -51.1 NC_005261.1 + 34454 0.66 0.986567
Target:  5'- cGCCgGGgcacggGCCGGGGGccccguaCCUGCg -3'
miRNA:   3'- -CGGgUCaaa---CGGUUCCUauug---GGACG- -5'
23844 5' -51.1 NC_005261.1 + 34158 0.67 0.980742
Target:  5'- cGCCuCGGacgagUGCUucGAGGAgauCCCUGUg -3'
miRNA:   3'- -CGG-GUCaa---ACGG--UUCCUauuGGGACG- -5'
23844 5' -51.1 NC_005261.1 + 32333 0.66 0.988172
Target:  5'- cGCCCGGcgugGCCuGGGAcgcgGACCaggGCc -3'
miRNA:   3'- -CGGGUCaaa-CGGuUCCUa---UUGGga-CG- -5'
23844 5' -51.1 NC_005261.1 + 31002 0.67 0.973208
Target:  5'- cGgCCGGg--GCCAGGG---GCCCgGCg -3'
miRNA:   3'- -CgGGUCaaaCGGUUCCuauUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 29157 0.69 0.938319
Target:  5'- cGCCCGcGgauccaGCCAAGGccagGGCCCgGCg -3'
miRNA:   3'- -CGGGU-Caaa---CGGUUCCua--UUGGGaCG- -5'
23844 5' -51.1 NC_005261.1 + 29125 0.72 0.85169
Target:  5'- aGCCCuGgc-GCCGGGGGgcGCCCcGCc -3'
miRNA:   3'- -CGGGuCaaaCGGUUCCUauUGGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.