miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23847 3' -56.4 NC_005261.1 + 74947 0.66 0.890003
Target:  5'- cGGCGCgGGcgcgCUCGGCgCGcucGAGGCc -3'
miRNA:   3'- aCUGCGaCCuua-GAGCCG-GC---UUCCGc -5'
23847 3' -56.4 NC_005261.1 + 81371 0.66 0.890003
Target:  5'- gGGCGCcGGg--CUC-GCUGggGGCGc -3'
miRNA:   3'- aCUGCGaCCuuaGAGcCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 37243 0.66 0.889325
Target:  5'- cGGCGCgUGGAcagcgcggagaccAUCcUGGCCGAGccgugccgcGGCGa -3'
miRNA:   3'- aCUGCG-ACCU-------------UAGaGCCGGCUU---------CCGC- -5'
23847 3' -56.4 NC_005261.1 + 78216 0.66 0.889325
Target:  5'- cGugGCUGGccugccgCUCGcucagcaGCCGcAGGCGu -3'
miRNA:   3'- aCugCGACCuua----GAGC-------CGGCuUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 87773 0.66 0.883823
Target:  5'- cUGGCGCgagGGucaccGUCUUGGCCGccgcguccauggccGGCGg -3'
miRNA:   3'- -ACUGCGa--CCu----UAGAGCCGGCuu------------CCGC- -5'
23847 3' -56.4 NC_005261.1 + 55052 0.66 0.883125
Target:  5'- -uGCGCgGGGccggcgagCUCGGCCGccgAAGGCa -3'
miRNA:   3'- acUGCGaCCUua------GAGCCGGC---UUCCGc -5'
23847 3' -56.4 NC_005261.1 + 118009 0.66 0.883125
Target:  5'- cGGCGCUGGAcgCugUCGGacgcaCGcGGGGCc -3'
miRNA:   3'- aCUGCGACCUuaG--AGCCg----GC-UUCCGc -5'
23847 3' -56.4 NC_005261.1 + 43409 0.66 0.883125
Target:  5'- aGGCGCcGGGGgcggcCUCcGCCGccGGCGg -3'
miRNA:   3'- aCUGCGaCCUUa----GAGcCGGCuuCCGC- -5'
23847 3' -56.4 NC_005261.1 + 13678 0.66 0.883125
Target:  5'- gGGCGCgGGGcgCgCGGgCGuGGGGCGg -3'
miRNA:   3'- aCUGCGaCCUuaGaGCCgGC-UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 83668 0.66 0.883125
Target:  5'- gGACGCgcgccUGGGcgCgcagCGcGCCGccGAGGCGg -3'
miRNA:   3'- aCUGCG-----ACCUuaGa---GC-CGGC--UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 59415 0.66 0.883125
Target:  5'- cGGCGCcGGcgcuGUCgcgCGGCCcGGcAGGCGc -3'
miRNA:   3'- aCUGCGaCCu---UAGa--GCCGG-CU-UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 102328 0.66 0.882425
Target:  5'- cGGCGCgcagccgcgccagCUCGGCCgcgucGAAGGCGg -3'
miRNA:   3'- aCUGCGaccuua-------GAGCCGG-----CUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 46083 0.66 0.868703
Target:  5'- cGugGCcGGAcacgagcacGUa-CGGCCGggGGCc -3'
miRNA:   3'- aCugCGaCCU---------UAgaGCCGGCuuCCGc -5'
23847 3' -56.4 NC_005261.1 + 12483 0.66 0.868703
Target:  5'- cGACGCugugUGGAcUCUCcauGGCCccccGGGCGa -3'
miRNA:   3'- aCUGCG----ACCUuAGAG---CCGGcu--UCCGC- -5'
23847 3' -56.4 NC_005261.1 + 34394 0.66 0.868703
Target:  5'- cGGCGCaGGAGUUuaUCGaCCGGGuGGCGc -3'
miRNA:   3'- aCUGCGaCCUUAG--AGCcGGCUU-CCGC- -5'
23847 3' -56.4 NC_005261.1 + 55202 0.66 0.868703
Target:  5'- cGGCGUagcGcGGAUCcggCGGCCcGAGGCGg -3'
miRNA:   3'- aCUGCGa--C-CUUAGa--GCCGGcUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 96282 0.66 0.86117
Target:  5'- cGACGCUGGcgcggcuucGGcCUCGGCCGc--GCGc -3'
miRNA:   3'- aCUGCGACC---------UUaGAGCCGGCuucCGC- -5'
23847 3' -56.4 NC_005261.1 + 31579 0.67 0.85343
Target:  5'- gGGCGCgccGGAcgugagcgcgCUCGGCgCGcAGGGCGu -3'
miRNA:   3'- aCUGCGa--CCUua--------GAGCCG-GC-UUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 118642 0.67 0.85343
Target:  5'- cGGCGCUcugggccccGGGccgcgcgCUCggGGCUGAGGGCGg -3'
miRNA:   3'- aCUGCGA---------CCUua-----GAG--CCGGCUUCCGC- -5'
23847 3' -56.4 NC_005261.1 + 79662 0.67 0.851068
Target:  5'- cGA-GCUGGcccuccaccggcucGcUCUCGuuGCCGAAGGCGa -3'
miRNA:   3'- aCUgCGACC--------------UuAGAGC--CGGCUUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.